For the case, I didn't modify the roms_upwelling.in.
However, when I run the case of upwelling, the error goes.
I searched the similar errors on the web and tried to fix it, but finally failed.
Can you help me? thanks.
Code: Select all
$mpirun -np 9 ./romsM roms_upwelling.in
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Model Input Parameters: ROMS/TOMS version 3.8
Saturday - August 3, 2019 - 10:15:27 PM
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Wind-Driven Upwelling/Downwelling over a Periodic Channel
Operating system : Linux
CPU/hardware : x86_64
Compiler system : gfortran
Compiler command : /usr/local/bin/mpif90
Compiler flags : -frepack-arrays -O3 -ffast-math -
MPI Communicator : 1140850688 PET size = 9
Input Script : roms_upwelling.in
SVN Root URL : https://www.myroms.org/svn/src/trunk
SVN Revision :
Local Root : /home/lairuixun/ROMS0803/trunk
Header Dir : /home/lairuixun/ROMS0803/test/upwelling
Header file : upwelling.h
Analytical Dir : /home/lairuixun/ROMS0803/test/upwelling
Resolution, Grid 01: 41x80x16, Parallel Nodes: 9, Tiling: 3x3
Physical Parameters, Grid: 01
=============================
288 ntimes Number of timesteps for 3-D equations.
300.000 dt Timestep size (s) for 3-D equations.
30 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
72 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
72 nHIS Number of timesteps between the writing fields
into history file.
0 nQCK Number of timesteps between the writing fields
into quicksave file.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
2.0000E-02 Zob Bottom roughness (m).
2 Vtransform S-coordinate transformation equation.
4 Vstretching S-coordinate stretching function.
3.0000E+00 theta_s S-coordinate surface control parameter.
0.0000E+00 theta_b S-coordinate bottom control parameter.
25.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.00 time_ref Reference time for units attribute (yyyymmdd.dd)
0.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
0.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
14.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1027.000 R0 Background density (kg/m3) used in linear Equation
of State.
1.7000E-04 Tcoef Thermal expansion coefficient (1/Celsius).
7.6000E-04 Scoef Saline contraction coefficient (1/PSU).
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt
T Hout(idDano) Write out density anomaly.
Output/Input Files:
Output Restart File: roms_rst.nc
Output History File: roms_his.nc
Tile partition information for Grid 01: 41x80x16 tiling: 3x3
tile Istr Iend Jstr Jend Npts
0 1 14 1 27 6048
1 15 28 1 27 6048
2 29 41 1 27 5616
3 1 14 28 54 6048
4 15 28 28 54 6048
5 29 41 28 54 5616
6 1 14 55 80 5824
7 15 28 55 80 5824
8 29 41 55 80 5408
Tile minimum and maximum fractional coordinates for Grid 01:
(interior points only)
tile Xmin Xmax Ymin Ymax grid
0 0.50 14.50 0.50 27.50 RHO-points
1 14.50 28.50 0.50 27.50 RHO-points
2 28.50 41.50 0.50 27.50 RHO-points
3 0.50 14.50 27.50 54.50 RHO-points
4 14.50 28.50 27.50 54.50 RHO-points
5 28.50 41.50 27.50 54.50 RHO-points
6 0.50 14.50 54.50 80.50 RHO-points
7 14.50 28.50 54.50 80.50 RHO-points
8 28.50 41.50 54.50 80.50 RHO-points
0 1.00 14.50 0.50 27.50 U-points
1 14.50 28.50 0.50 27.50 U-points
2 28.50 41.00 0.50 27.50 U-points
3 1.00 14.50 27.50 54.50 U-points
4 14.50 28.50 27.50 54.50 U-points
5 28.50 41.00 27.50 54.50 U-points
6 1.00 14.50 54.50 80.50 U-points
7 14.50 28.50 54.50 80.50 U-points
8 28.50 41.00 54.50 80.50 U-points
0 0.50 14.50 1.00 27.50 V-points
1 14.50 28.50 1.00 27.50 V-points
2 28.50 41.50 1.00 27.50 V-points
3 0.50 14.50 27.50 54.50 V-points
4 14.50 28.50 27.50 54.50 V-points
5 28.50 41.50 27.50 54.50 V-points
6 0.50 14.50 54.50 80.00 V-points
7 14.50 28.50 54.50 80.00 V-points
8 28.50 41.50 54.50 80.00 V-points
Maximum halo size in XI and ETA directions:
HaloSizeI(1) = 81
HaloSizeJ(1) = 117
TileSide(1) = 33
TileSize(1) = 693
Lateral Boundary Conditions: NLM
============================
Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------
zeta 1 Periodic Closed Periodic Closed
ubar 1 Periodic Closed Periodic Closed
vbar 1 Periodic Closed Periodic Closed
u 1 Periodic Closed Periodic Closed
v 1 Periodic Closed Periodic Closed
temp 1 Periodic Closed Periodic Closed
salt 1 Periodic Closed Periodic Closed
Activated C-preprocessing Options:
UPWELLING Wind-Driven Upwelling/Downwelling over a Periodic Channel
ANA_BSFLUX Analytical kinematic bottom salinity flux
ANA_BTFLUX Analytical kinematic bottom temperature flux
ANA_GRID Analytical grid set-up
ANA_INITIAL Analytical initial conditions
ANA_SMFLUX Analytical kinematic surface momentum flux
ANA_SSFLUX Analytical kinematic surface salinity flux
ANA_STFLUX Analytical kinematic surface temperature flux
ANA_VMIX Analytical vertical mixing coefficients
ASSUMED_SHAPE Using assumed-shape arrays
!BOUNDARY_ALLGATHER Using mpi_allreduce in mp_boundary routine
!COLLECT_ALL... Using mpi_isend/mpi_recv in mp_collect routine
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002)
DOUBLE_PRECISION Double precision arithmetic numerical kernel.
MPI MPI distributed-memory configuration
NONLINEAR Nonlinear Model
!NONLIN_EOS Linear Equation of State for seawater
POWER_LAW Power-law shape time-averaging barotropic filter
PROFILE Time profiling activated
REDUCE_ALLGATHER Using mpi_allgather in mp_reduce routine
!RST_SINGLE Double precision fields in restart NetCDF file
SALINITY Using salinity
SOLVE3D Solving 3D Primitive Equations
SPLINES_VDIFF Parabolic Spline Reconstruction for Vertical Diffusion
SPLINES_VVISC Parabolic Spline Reconstruction for Vertical Viscosity
TS_C4HADVECTION Fourth-order centered horizontal advection of tracers
TS_C4VADVECTION Fourth-order centered vertical advection of tracers
UV_ADV Advection of momentum
UV_COR Coriolis term
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum
UV_C4VADVECTION Fourth-order centered vertical advection of momentum
VAR_RHO_2D Variable density barotropic mode
CHECKDEFS - no bottom stress formulation is selected.
Found Error: 05 Line: 1128 Source: ROMS/Utility/inp_par.F
Found Error: 05 Line: 111 Source: ROMS/Drivers/nl_ocean.h
Elapsed CPU time (seconds):
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Dynamic and Automatic memory (MB) usage for Grid 01: 41x80x16 tiling: 3x3
tile Dynamic Automatic USAGE MPI-Buffers
0 0.96 0.96 1.92 0.00
1 0.96 0.96 1.92 0.00
2 0.96 0.96 1.92 0.00
3 0.96 0.96 1.92 0.00
4 0.96 0.96 1.92 0.00
5 0.96 0.96 1.92 0.00
6 0.96 0.96 1.92 0.00
7 0.96 0.96 1.92 0.00
8 0.96 0.96 1.92 0.00
TOTAL 8.65 8.63 17.28 0.00
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
ROMS/TOMS - Output NetCDF summary for Grid 01:
Found Error: 05 Line: 350 Source: ROMS/Utility/close_io.F
ROMS/TOMS - Configuration error ..... exit_flag: 5
It is that simple, and you need to pay attention to what you are modifying.