I'm modeling the changes on Antarctica from 1996 to 2015 using WAOM10. But I met the following problem,
I used the forcing files of the whole period 1996-2015 to run the model, the running stopped at the first stpe with the error as shown as the log file(Attachemen file 1: ocean_waom10_log_1996_2015.txt).
Code: Select all
STEP Day HH:MM:SS KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOLUME
C => (i,j,k) Cu Cv Cw Max Speed
0 152 02:00:00 7.058180E-04 2.027254E+04 2.027254E+04 6.408357E+16
(173,296,19) 4.126555E-02 5.934571E-02 0.000000E+00 1.634354E+00
DEF_HIS - creating history file, Grid 01: /scratch/gh9/mx3818/waom/output_1996_2015/ocean_his_1996_2015_test1_0001.nc
DEF_VAR - unable to define variable: Tobc_in
in NetCDF file: /scratch/gh9/mx3818/waom/output_1996_2015/ocean_his_1996_2015_test1_0001.nc
Elapsed CPU time (seconds):
Node # 47 CPU: 49.808
Node # 1 CPU: 51.386
Node # 2 CPU: 51.861
Node # 3 CPU: 50.420
Node # 33 CPU: 52.630
Node # 4 CPU: 51.964
Node # 6 CPU: 50.073
Node # 7 CPU: 48.978
Node # 8 CPU: 47.581
Node # 9 CPU: 49.910
Node # 10 CPU: 48.759
Node # 11 CPU: 49.182
Node # 12 CPU: 49.912
Node # 13 CPU: 49.711
Node # 14 CPU: 47.890
Node # 15 CPU: 47.818
Node # 16 CPU: 47.726
Node # 17 CPU: 49.544
Node # 18 CPU: 49.488
Node # 19 CPU: 48.337
Node # 20 CPU: 50.622
Node # 21 CPU: 48.010
Node # 22 CPU: 48.261
Node # 23 CPU: 47.516
Node # 24 CPU: 46.993
Node # 37 CPU: 50.395
Node # 25 CPU: 50.672
Node # 27 CPU: 50.133
Node # 28 CPU: 50.653
Node # 29 CPU: 50.364
Node # 30 CPU: 50.579
Node # 26 CPU: 50.405
Node # 38 CPU: 50.246
Node # 31 CPU: 50.047
Node # 34 CPU: 51.894
Node # 32 CPU: 49.794
Node # 5 CPU: 50.217
Node # 36 CPU: 51.928
Node # 35 CPU: 51.028
Node # 39 CPU: 50.364
Node # 40 CPU: 47.674
Node # 41 CPU: 49.918
Node # 42 CPU: 50.169
Node # 43 CPU: 49.846
Node # 44 CPU: 51.272
Node # 45 CPU: 50.018
Node # 46 CPU: 49.840
Node # 0 CPU: 37.019
Node #184 CPU: 47.974
Node #144 CPU: 51.584
Node #145 CPU: 55.849
Node #146 CPU: 56.330
Node #181 CPU: 50.827
Node #149 CPU: 54.669
Node #148 CPU: 56.098
Node #151 CPU: 53.066
Node #147 CPU: 54.594
Node #165 CPU: 51.952
Node #153 CPU: 53.125
Node #150 CPU: 54.709
Node #155 CPU: 52.436
Node #259 CPU: 56.792
Node #156 CPU: 53.097
Node #157 CPU: 52.236
Node #154 CPU: 52.946
Node #158 CPU: 51.918
Node #152 CPU: 51.552
Node #161 CPU: 53.661
Node #162 CPU: 54.079
Node #191 CPU: 49.885
Node #164 CPU: 53.002
Node #163 CPU: 52.222
Node # 99 CPU: 53.022
Node #167 CPU: 51.326
Node #142 CPU: 53.654
Node #166 CPU: 52.015
Node #143 CPU: 53.023
Node #169 CPU: 51.329
Node #122 CPU: 52.204
Node #170 CPU: 51.750
Node # 98 CPU: 54.881
Node #168 CPU: 49.120
Node #171 CPU: 50.937
Node #128 CPU: 54.281
Node #172 CPU: 51.658
Node #100 CPU: 55.540
Node #173 CPU: 50.911
Node #135 CPU: 54.140
Node #175 CPU: 50.425
Node #287 CPU: 52.994
Node #159 CPU: 52.346
Node #241 CPU: 52.734
Node #103 CPU: 51.612
Node #176 CPU: 49.400
Node # 94 CPU: 49.705
Node #242 CPU: 53.172
Node #104 CPU: 50.331
Node #177 CPU: 51.738
Node # 95 CPU: 49.316
Node #243 CPU: 52.623
Node # 97 CPU: 55.084
Node #227 CPU: 52.438
Node #174 CPU: 51.344
Node #244 CPU: 53.173
Node #105 CPU: 51.877
Node #231 CPU: 51.466
Node #179 CPU: 50.888
Node # 48 CPU: 49.862
Node #245 CPU: 52.624
Node #107 CPU: 51.173
Node #193 CPU: 54.088
Node #180 CPU: 51.603
Node # 49 CPU: 54.038
Node #246 CPU: 52.829
Node #108 CPU: 53.248
Node #217 CPU: 52.592
Node #182 CPU: 51.185
Node # 50 CPU: 53.374
Node #247 CPU: 51.853
Node #109 CPU: 51.587
Node #194 CPU: 53.182
Node #183 CPU: 50.384
Node # 51 CPU: 52.901
Node #261 CPU: 56.942
Node #110 CPU: 51.759
Node #224 CPU: 51.081
Node #178 CPU: 51.778
Node # 52 CPU: 53.914
Node #249 CPU: 52.050
Node #106 CPU: 52.180
Node #195 CPU: 52.319
Node #160 CPU: 51.231
Node # 54 CPU: 51.786
Node #248 CPU: 49.245
Node #111 CPU: 51.968
Node #198 CPU: 52.657
Node #185 CPU: 49.985
Node # 55 CPU: 51.790
Node #251 CPU: 51.687
Node #112 CPU: 49.876
Node #239 CPU: 50.913
Node #187 CPU: 49.868
Node # 88 CPU: 48.330
Node #252 CPU: 52.385
Node #113 CPU: 51.894
Node #200 CPU: 49.848
Node #188 CPU: 50.676
Node # 71 CPU: 50.848
Node #253 CPU: 51.512
Node #114 CPU: 51.978
Node #201 CPU: 51.840
Node #189 CPU: 50.132
Node # 57 CPU: 51.734
Node #262 CPU: 56.918
Node #115 CPU: 51.625
Node #202 CPU: 51.669
Node #190 CPU: 50.434
Node # 59 CPU: 51.504
Node #254 CPU: 51.821
Node #116 CPU: 52.635
Node #203 CPU: 51.474
Node #186 CPU: 50.999
Node # 60 CPU: 52.292
Node #286 CPU: 53.519
Node #117 CPU: 51.686
Node #204 CPU: 53.017
Node # 61 CPU: 51.433
Node #282 CPU: 54.001
Node #118 CPU: 51.483
Node #205 CPU: 51.320
Node # 62 CPU: 51.205
Node #258 CPU: 58.269
Node #101 CPU: 52.956
Node #192 CPU: 49.713
Node # 65 CPU: 53.054
Node #256 CPU: 54.049
Node #207 CPU: 51.817
Node # 70 CPU: 51.559
Node #260 CPU: 58.242
Node #238 CPU: 51.067
Node # 63 CPU: 51.097
Node #257 CPU: 58.169
Node #121 CPU: 52.171
Node #209 CPU: 52.982
Node # 90 CPU: 49.785
Node #263 CPU: 55.056
Node #120 CPU: 49.970
Node #206 CPU: 51.472
Node # 67 CPU: 52.296
Node #255 CPU: 51.376
Node #123 CPU: 51.603
Node #211 CPU: 51.981
Node # 58 CPU: 51.713
Node #264 CPU: 51.925
Node #124 CPU: 52.749
Node #212 CPU: 52.833
Node # 68 CPU: 53.488
Node #265 CPU: 54.524
Node #125 CPU: 51.612
Node #214 CPU: 51.866
Node # 66 CPU: 53.856
Node #266 CPU: 54.684
Node #102 CPU: 52.642
Node #210 CPU: 53.709
Node # 56 CPU: 49.469
Node #267 CPU: 53.904
Node #119 CPU: 50.626
Node #216 CPU: 49.586
Node # 53 CPU: 52.853
Node #268 CPU: 55.434
Node #126 CPU: 52.212
Node #229 CPU: 52.182
Node #270 CPU: 53.790
Node #129 CPU: 56.524
Node # 72 CPU: 47.750
Node #271 CPU: 53.083
Node #130 CPU: 56.620
Node #199 CPU: 51.166
Node # 73 CPU: 50.850
Node #269 CPU: 54.338
Node #131 CPU: 55.341
Node #219 CPU: 51.419
Node # 74 CPU: 51.100
Node #272 CPU: 53.995
Node #132 CPU: 56.871
Node #220 CPU: 52.802
Node # 75 CPU: 50.158
Node #273 CPU: 55.897
Node #127 CPU: 51.622
Node #221 CPU: 51.931
Node # 77 CPU: 50.368
Node #274 CPU: 56.141
Node #134 CPU: 54.825
Node #222 CPU: 51.915
Node # 78 CPU: 50.446
Node #276 CPU: 55.621
Node #136 CPU: 53.319
Node #225 CPU: 53.245
Node # 76 CPU: 51.414
Node #277 CPU: 54.483
Node #137 CPU: 53.888
Node #196 CPU: 53.828
Node # 80 CPU: 50.127
Node #275 CPU: 54.866
Node #138 CPU: 54.411
Node #223 CPU: 51.647
Node # 81 CPU: 51.655
Node #278 CPU: 54.545
Node #133 CPU: 54.473
Node #218 CPU: 52.501
Node # 79 CPU: 49.878
Node #279 CPU: 53.867
Node #139 CPU: 53.529
Node #226 CPU: 53.096
Node # 84 CPU: 53.300
Node #250 CPU: 51.991
Node #140 CPU: 54.593
Node #197 CPU: 52.652
Node # 85 CPU: 51.485
Node #281 CPU: 53.620
Node #141 CPU: 53.582
Node #228 CPU: 53.722
Node # 83 CPU: 51.332
Node #280 CPU: 51.422
Node # 96 CPU: 50.175
Node #230 CPU: 52.352
Node # 82 CPU: 52.492
Node #283 CPU: 53.218
Node #215 CPU: 50.555
Node # 87 CPU: 50.521
Node #284 CPU: 54.175
Node #213 CPU: 51.440
Node # 69 CPU: 52.827
Node #285 CPU: 53.521
Node #232 CPU: 49.159
Node # 89 CPU: 50.141
Node #240 CPU: 48.372
Node #233 CPU: 51.638
Node #234 CPU: 51.409
Node # 86 CPU: 51.824
Node #235 CPU: 51.084
Node # 91 CPU: 49.260
Node #236 CPU: 52.223
Node #237 CPU: 51.316
Node #208 CPU: 51.652
Node # 92 CPU: 50.369
Node # 93 CPU: 49.416
Node # 64 CPU: 51.448
Total: 14943.855
Nonlinear model elapsed time profile, Grid: 01
Allocation and array initialization .............. 62.051 ( 0.4152 %)
Ocean state initialization ....................... 1.431 ( 0.0096 %)
Reading of input data ............................ 3812.617 (25.5129 %)
Processing of input data ......................... 1.326 ( 0.0089 %)
Processing of output time averaged data .......... 0.278 ( 0.0019 %)
Computation of vertical boundary conditions ...... 0.140 ( 0.0009 %)
Computation of global information integrals ...... 0.812 ( 0.0054 %)
Tidal forcing .................................... 1.746 ( 0.0117 %)
2D/3D coupling, vertical metrics ................. 1.337 ( 0.0089 %)
Omega vertical velocity .......................... 0.501 ( 0.0034 %)
Equation of state for seawater ................... 1.529 ( 0.0102 %)
KPP vertical mixing parameterization ............. 3.556 ( 0.0238 %)
Total: 3887.324 26.0129
Nonlinear model message Passage profile, Grid: 01
Message Passage: 2D halo exchanges ............... 3.539 ( 0.0237 %)
Message Passage: 3D halo exchanges ............... 2.220 ( 0.0149 %)
Message Passage: 4D halo exchanges ............... 0.482 ( 0.0032 %)
Message Passage: data broadcast .................. 0.350 ( 0.0023 %)
Message Passage: data reduction .................. 320.743 ( 2.1463 %)
Message Passage: boundary data gathering ......... 1.088 ( 0.0073 %)
Total: 328.423 2.1977
All percentages are with respect to total time = 14943.855
ROMS/TOMS - Output NetCDF summary for Grid 01:
Analytical header files used:
ROMS/Functionals/ana_btflux.h
ROMS/Functionals/ana_srflux.h
ROMS/TOMS - Output error ............ exit_flag: 3
ERROR: Abnormal termination: NetCDF OUTPUT.
REASON: NetCDF: Invalid dimension ID or nameBut once the forcing files contains the nudge_2012.nc file, the running will stop in the first step with similar log file as attachment 1.
However, my colleagues and I checked all of my nudge files and look at the fields using ncview and attributes/variables names using ncdump -h command, we can’t see anything wrong with them. I even copied nudge_ 2011.nc as nudge_ 2012.nc (only changed the ocean time), but the result had no changes.
I have no other way to try, so I come here for help. Could you please give me some information on this? Any idea will be much appreciated! Thanks in advance！
Best Regards,
Meng
