I am trying to running a idealized coupled case (COAWST), but there is error occurrd as below, I am using ifort:
Code: Select all
/home/zhou/COAWST/Projects/Idealized_Mount_Hope
Coupled Input File name = coupling_idealized_mount_hope.in
Model Coupling:
Ocean Model MPI nodes: 000 - 031
Waves Model MPI nodes: 032 - 063
Model Input Parameters: ROMS/TOMS version 3.7
Saturday - October 7, 2017 - 1:51:34 PM
-----------------------------------------------------------------------------
Idealized Mount Hope
Operating system : Linux
CPU/hardware : x86_64
Compiler system : ifort
Compiler command : /usr/mpi/intel/openmpi-1.3.2/bin/mpif90
Compiler flags : -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -assume byterecl -I/home/zhou/COAWST/install/include -free
Input Script :
SVN Root URL : https:://myroms.org/svn/src
SVN Revision : 1188M
Local Root : /home/zhou/COAWST
Header Dir : /home/zhou/COAWST/Projects/Idealized_Mount_Hope
Header file : idealized_mount_hope.h
Analytical Dir: /home/zhou/COAWST/Projects/Idealized_Mount_Hope
Resolution, Grid 01: 0098x0398x008, Parallel Nodes: 32, Tiling: 004x008
Physical Parameters, Grid: 01
=============================
720 ntimes Number of timesteps for 3-D equations.
60.000 dt Timestep size (s) for 3-D equations.
20 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
720 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
1 nSTA Number of timesteps between the writing of data
the stations file.
T ldefout Switch to create a new output NetCDF file(s).
60 nHIS Number of timesteps between the writing fields
into history file.
939942008 nQCK Number of timesteps between the writing fields
into quicksave file.
939942008 ndefQCK Number of timesteps between creation of new
brief snpashots files.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
60 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
1 ntsDIA Starting timestep for the accumulation of output
time-averaged diagnostics data.
60 nDIA Number of timesteps between the writing of
time-averaged data into diagnostics file.
1.0000E-03 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
5.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
5.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
5.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
3.000 gls_p GLS stability exponent.
1.500 gls_m GLS turbulent kinetic energy exponent.
-1.000 gls_n GLS turbulent length scale exponent.
7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy.
1.0000E-12 gls_Pmin GLS minimum value of dissipation.
5.4770E-01 gls_cmu0 GLS stability coefficient.
1.4400E+00 gls_c1 GLS shear production coefficient.
1.9200E+00 gls_c2 GLS dissipation coefficient.
-4.0000E-01 gls_c3m GLS stable buoyancy production coefficient.
1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient.
1.0000E+00 gls_sigk GLS constant Schmidt number for TKE.
1.3000E+00 gls_sigp GLS constant Schmidt number for PSI.
1400.000 charnok_alpha Charnok factor for Zos calculation.
0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave).
0.250 sz_alpha Factor for Wave dissipation surface tke flux .
100.000 crgban_cw Factor for Craig/Banner surface tke flux.
0.000 wec_alpha WEC factor for roller/breaking energy distribution.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
2.5000E-02 rdrg2 Quadratic bottom drag coefficient.
1.5000E-02 Zob Bottom roughness (m).
5.0000E-01 Zos Surface roughness (m).
1 Vtransform S-coordinate transformation equation.
1 Vstretching S-coordinate stretching function.
1.0000E+00 theta_s S-coordinate surface control parameter.
1.0000E+00 theta_b S-coordinate bottom control parameter.
0.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.00 time_ref Reference time for units attribute (yyyymmdd.dd)
0.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
0.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
9.0000E+01 Tnudg_SSS Nudging/relaxation time scale (days)
for sea surface salinity.
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
10.000 T0 Background potential temperature (C) constant.
30.000 S0 Background salinity (PSU) constant.
1027.000 R0 Background density (kg/m3) used in linear Equation
of State.
1.7000E-04 Tcoef Thermal expansion coefficient (1/Celsius).
7.6000E-04 Scoef Saline contraction coefficient (1/PSU).
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idBath) Write out time-dependent bathymetry.
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt
T Hout(idpthR) Write out time-varying dephts of RHO-points.
T Hout(idpthU) Write out time-varying dephts of U-points.
T Hout(idpthV) Write out time-varying dephts of V-points.
T Hout(idpthW) Write out time-varying dephts of W-points.
T Hout(idUbms) Write out bottom U-momentum stress.
T Hout(idVbms) Write out bottom V-momentum stress.
T Hout(idUbrs) Write out bottom U-current stress.
T Hout(idVbrs) Write out bottom V-current stress.
T Hout(idUbws) Write out wind-induced, bottom U-wave stress.
T Hout(idVbws) Write out wind-induced, bottom V-wave stress.
T Hout(idUbcs) Write out max wind + current, bottom U-wave stress.
T Hout(idVbcs) Write out max wind + current, bottom V-wave stress.
T Hout(idUVwc) Write out max wind + current, bottom UV-wave stress.
T Hout(idUbot) Write out bed wave orbital U-velocity.
T Hout(idVbot) Write out bed wave orbital V-velocity.
T Hout(idUbur) Write out bottom U-momentum above bed.
T Hout(idVbvr) Write out bottom V-momentum above bed.
T Hout(idU2rs) Write out total 2D u-radiation stress.
T Hout(idV2rs) Write out total 2D v-radiation stress.
T Hout(idU2Sd) Write out 2D u-momentum stokes velocity.
T Hout(idV2Sd) Write out 2D v-momentum stokes velocity.
T Hout(idU3rs) Write out total 3D u-radiation stress.
T Hout(idV3rs) Write out total 3D v-radiation stress.
T Hout(idU3Sd) Write out 3D u-momentum stokes velocity.
T Hout(idV3Sd) Write out 3D v-momentum stokes velocity.
T Hout(idW3Sd) Write out 3D omega-momentum stokes velocity.
T Hout(idW3St) Write out 3D w-momentum stokes velocity.
T Hout(idWztw) Write out WEC quasi-static sea level adjustment.
T Hout(idWqsp) Write out WEC quasi-static pressure.
T Hout(idWbeh) Write out WEC Bernoulli head.
T Hout(idWamp) Write out wave height.
T Hout(idWlen) Write out wavelength.
T Hout(idWdir) Write out wave direction.
T Hout(idWptp) Write out wave surface period.
T Hout(idWpbt) Write out wave bottom period.
T Hout(idWorb) Write out wave bottom orbital velocity.
T Hout(idWdif) Write out wave dissipation due to bottom friction.
T Hout(idWdib) Write out wave dissipation due to breaking.
T Hout(idWdiw) Write out wave dissipation due to white capping.
T Hout(idUwav) Wave-avg surface u-velocity.
T Hout(idVwav) Wave-avg surface v-velocity.
T Hout(idVvis) Write out vertical viscosity: AKv.
T Hout(idMtke) Write out turbulent kinetic energy.
T Hout(idMtls) Write out turbulent generic length-scale.
T Qout(idBath) Write out time-dependent bathymetry.
T Qout(idFsur) Write out free-surface.
T Qout(idUbar) Write out 2D U-momentum component.
T Qout(idVbar) Write out 2D V-momentum component.
T Qout(idu2dE) Write out 2D U-eastward at RHO-points.
T Qout(idv2dN) Write out 2D V-northward at RHO-points.
T Qout(idUsur) Write out surface U-momentum component.
T Qout(idVsur) Write out surface V-momentum component.
T Qout(idsurT) Write out surface tracer 01: temp_sur
T Qout(idsurT) Write out surface tracer 02: salt_sur
T Aout(idU2Sd) Write out averaged 2D u-momentum stokes velocity.
T Aout(idV2Sd) Write out averaged 2D v-momentum stokes velocity.
T Aout(idSdif) Write out averaged vertical diffusion: AKt(isalt).
T Dout(M2rate) Write out 2D momentum acceleration.
T Dout(M2pgrd) Write out 2D momentum pressure gradient.
T Dout(M2hadv) Write out 2D momentum horizontal advection.
T Dout(M2xadv) Write out 2D momentum horizontal X-advection.
T Dout(M2yadv) Write out 2D momentum horizontal Y-advection.
T Dout(M2hvis) Write out 2D momentum horizontal viscosity.
T Dout(M2xvis) Write out 2D momentum horizontal X-viscosity.
T Dout(M2yvis) Write out 2D momentum horizontal Y-viscosity.
T Dout(M2sstr) Write out 2D momentum surface stress.
T Dout(M2bstr) Write out 2D momentum bottom stress.
Output/Input Files:
Output Restart File: ocean_rst.nc
Output History File: ocean_his_coupled.nc
Output Averages File: ocean_avg_coupled.nc
Output Diagnostics File: ocean_dia.nc
Output Stations File: ocean_sta.nc
Physical parameters File:
Input Grid File: /home/zhou/COAWST/Projects/Idealized_Mount_Hope/idealized_mount_hope_grid_low_resolution.nc
Station positions File: /home/zhou/COAWST/Projects/Idealized_Mount_Hope/stations_idealized_mount_hope.in
Tile partition information for Grid 01: 0098x0398x0008 tiling: 004x008
tile Istr Iend Jstr Jend Npts
Number of tracers: 3
0 1 24 1 49 9408
1 25 49 1 49 9800
2 50 74 1 49 9800
3 75 98 1 49 9408
4 1 24 50 99 9600
5 25 49 50 99 10000
6 50 74 50 99 10000
7 75 98 50 99 9600
8 1 24 100 149 9600
9 25 49 100 149 10000
10 50 74 100 149 10000
11 75 98 100 149 9600
12 1 24 150 199 9600
13 25 49 150 199 10000
14 50 74 150 199 10000
15 75 98 150 199 9600
16 1 24 200 249 9600
17 25 49 200 249 10000
18 50 74 200 249 10000
19 75 98 200 249 9600
20 1 24 250 299 9600
21 25 49 250 299 10000
22 50 74 250 299 10000
23 75 98 250 299 9600
24 1 24 300 349 9600
25 25 49 300 349 10000
26 50 74 300 349 10000
27 75 98 300 349 9600
28 1 24 350 398 9408
29 25 49 350 398 9800
30 50 74 350 398 9800
31 75 98 350 398 9408
Tile minimum and maximum fractional coordinates for Grid 01:
(interior points only)
tile Xmin Xmax Ymin Ymax grid
0 0.50 24.50 0.50 49.50 RHO-points
1 24.50 49.50 0.50 49.50 RHO-points
2 49.50 74.50 0.50 49.50 RHO-points
3 74.50 98.50 0.50 49.50 RHO-points
4 0.50 24.50 49.50 99.50 RHO-points
5 24.50 49.50 49.50 99.50 RHO-points
6 49.50 74.50 49.50 99.50 RHO-points
7 74.50 98.50 49.50 99.50 RHO-points
8 0.50 24.50 99.50 149.50 RHO-points
9 24.50 49.50 99.50 149.50 RHO-points
10 49.50 74.50 99.50 149.50 RHO-points
11 74.50 98.50 99.50 149.50 RHO-points
12 0.50 24.50 149.50 199.50 RHO-points
13 24.50 49.50 149.50 199.50 RHO-points
14 49.50 74.50 149.50 199.50 RHO-points
15 74.50 98.50 149.50 199.50 RHO-points
16 0.50 24.50 199.50 249.50 RHO-points
17 24.50 49.50 199.50 249.50 RHO-points
18 49.50 74.50 199.50 249.50 RHO-points
19 74.50 98.50 199.50 249.50 RHO-points
20 0.50 24.50 249.50 299.50 RHO-points
21 24.50 49.50 249.50 299.50 RHO-points
22 49.50 74.50 249.50 299.50 RHO-points
23 74.50 98.50 249.50 299.50 RHO-points
24 0.50 24.50 299.50 349.50 RHO-points
25 24.50 49.50 299.50 349.50 RHO-points
26 49.50 74.50 299.50 349.50 RHO-points
27 74.50 98.50 299.50 349.50 RHO-points
28 0.50 24.50 349.50 398.50 RHO-points
29 24.50 49.50 349.50 398.50 RHO-points
30 49.50 74.50 349.50 398.50 RHO-points
31 74.50 98.50 349.50 398.50 RHO-points
0 1.00 24.50 0.50 49.50 U-points
1 24.50 49.50 0.50 49.50 U-points
2 49.50 74.50 0.50 49.50 U-points
3 74.50 98.00 0.50 49.50 U-points
4 1.00 24.50 49.50 99.50 U-points
5 24.50 49.50 49.50 99.50 U-points
6 49.50 74.50 49.50 99.50 U-points
7 74.50 98.00 49.50 99.50 U-points
8 1.00 24.50 99.50 149.50 U-points
9 24.50 49.50 99.50 149.50 U-points
10 49.50 74.50 99.50 149.50 U-points
11 74.50 98.00 99.50 149.50 U-points
12 1.00 24.50 149.50 199.50 U-points
13 24.50 49.50 149.50 199.50 U-points
14 49.50 74.50 149.50 199.50 U-points
15 74.50 98.00 149.50 199.50 U-points
16 1.00 24.50 199.50 249.50 U-points
17 24.50 49.50 199.50 249.50 U-points
18 49.50 74.50 199.50 249.50 U-points
19 74.50 98.00 199.50 249.50 U-points
20 1.00 24.50 249.50 299.50 U-points
21 24.50 49.50 249.50 299.50 U-points
22 49.50 74.50 249.50 299.50 U-points
23 74.50 98.00 249.50 299.50 U-points
24 1.00 24.50 299.50 349.50 U-points
25 24.50 49.50 299.50 349.50 U-points
26 49.50 74.50 299.50 349.50 U-points
27 74.50 98.00 299.50 349.50 U-points
28 1.00 24.50 349.50 398.50 U-points
29 24.50 49.50 349.50 398.50 U-points
30 49.50 74.50 349.50 398.50 U-points
31 74.50 98.00 349.50 398.50 U-points
0 0.50 24.50 1.00 49.50 V-points
1 24.50 49.50 1.00 49.50 V-points
2 49.50 74.50 1.00 49.50 V-points
3 74.50 98.50 1.00 49.50 V-points
4 0.50 24.50 49.50 99.50 V-points
5 24.50 49.50 49.50 99.50 V-points
6 49.50 74.50 49.50 99.50 V-points
7 74.50 98.50 49.50 99.50 V-points
8 0.50 24.50 99.50 149.50 V-points
9 24.50 49.50 99.50 149.50 V-points
10 49.50 74.50 99.50 149.50 V-points
11 74.50 98.50 99.50 149.50 V-points
12 0.50 24.50 149.50 199.50 V-points
13 24.50 49.50 149.50 199.50 V-points
14 49.50 74.50 149.50 199.50 V-points
15 74.50 98.50 149.50 199.50 V-points
16 0.50 24.50 199.50 249.50 V-points
17 24.50 49.50 199.50 249.50 V-points
18 49.50 74.50 199.50 249.50 V-points
19 74.50 98.50 199.50 249.50 V-points
20 0.50 24.50 249.50 299.50 V-points
21 24.50 49.50 249.50 299.50 V-points
22 49.50 74.50 249.50 299.50 V-points
23 74.50 98.50 249.50 299.50 V-points
24 0.50 24.50 299.50 349.50 V-points
25 24.50 49.50 299.50 349.50 V-points
26 49.50 74.50 299.50 349.50 V-points
27 74.50 98.50 299.50 349.50 V-points
28 0.50 24.50 349.50 398.00 V-points
29 24.50 49.50 349.50 398.00 V-points
30 49.50 74.50 349.50 398.00 V-points
31 74.50 98.50 349.50 398.00 V-points
Maximum halo size in XI and ETA directions:
HaloSizeI(1) = 117
HaloSizeJ(1) = 192
TileSide(1) = 58
TileSize(1) = 1914
SWAN grid 1 is preparing computation
Sediment Parameters, Grid: 01
=============================
Size Sd50 Csed Srho Wsed Erate poros
Class (mm) (kg/m3) (kg/m3) (mm/s) (kg/m2/s) (nondim)
1 4.0000E-03 0.0000E+00 2.6500E+03 1.0000E-01 6.0000E-03 0.0000E+00
tau_ce tau_cd nl_tnu2 nl_tnu4 Akt_bak Tnudg
(N/m2) (N/m2) (m2/s) (m4/s) (m2/s) (day)
1 5.0000E-02 1.0000E-01 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00
morph_fac
(nondim)
1 1.0000E+00
New bed layer formed when deposition exceeds 0.10000E-01 (m).
Two first layers are combined when 2nd layer smaller than 0.00000E+00 (m).
Rate coefficient for bed load transport = 0.15000E+00
F LtracerSponge(03Turning OFF sponge on tracer 03: mud_01
F LtracerSrc(03) Turning OFF point sources/Sink on tracer 03: mud_01
F LtracerCLM(03) Turning OFF processing of climatology tracer 03: mud_01
F LnudgeTCLM(03) Turning OFF nudging of climatology tracer 03: mud_01
T Hout(idTvar) Write out sediment01: mud_01
T Hout(idfrac) Write out bed fraction, sediment 01: mudfrac_01
T Hout(idfrac) Write out mass, sediment 01: mudmass_01
T Hout(idSbed) Write out BED property 01: bed_thickness
T Hout(idSbed) Write out BED property 02: bed_age
T Hout(idSbed) Write out BED property 03: bed_porosity
T Hout(idSbed) Write out BED property 04: bed_biodiff
T Hout(idBott) Write out BOTTOM property 01: grain_diameter
T Hout(idBott) Write out BOTTOM property 02: grain_density
T Hout(idBott) Write out BOTTOM property 03: settling_vel
T Hout(idBott) Write out BOTTOM property 04: erosion_stress
T Hout(idBott) Write out BOTTOM property 05: ripple_length
T Hout(idBott) Write out BOTTOM property 06: ripple_height
T Hout(idBott) Write out BOTTOM property 07: bed_wave_amp
T Hout(idBott) Write out BOTTOM property 08: Zo_def
T Hout(idBott) Write out BOTTOM property 09: Zo_app
T Hout(idBott) Write out BOTTOM property 15: active_layer_thickness
T Hout(idBott) Write out BOTTOM property 17: bed_inund_depth
T Hout(idBott) Write out BOTTOM property 18: dep_net
Stations Parameters, Grid: 01
=============================
3 Nstation Number of stations to write out into stations file.
T Sout(idbath) Write out free-surface.
T Sout(idFsur) Write out free-surface.
T Sout(idUbar) Write out 2D U-momentum component.
T Sout(idVbar) Write out 2D V-momentum component.
T Sout(idUvel) Write out 3D U-momentum component.
T Sout(idVvel) Write out 3D V-momentum component.
T Sout(idWvel) Write out W-momentum component.
T Sout(idOvel) Write out omega vertical velocity.
T Sout(idTvar) Write out tracer 01: temp
T Sout(idTvar) Write out tracer 02: salt
T Sout(idTvar) Write out tracer 03: mud_01
T Sout(idUsms) Write out surface U-momentum stress.
T Sout(idVsms) Write out surface V-momentum stress.
T Sout(idUbms) Write out bottom U-momentum stress.
T Sout(idVbms) Write out bottom V-momentum stress.
T Sout(idUbrs) Write out bottom U-current stress.
T Sout(idVbrs) Write out bottom V-current stress.
T Sout(idUbws) Write out wind-induced, bottom U-wave stress.
T Sout(idVbws) Write out wind-induced, bottom V-wave stress.
T Sout(idUbcs) Write out max wind + current, bottom U-wave stress.
T Sout(idVbcs) Write out max wind + current, bottom V-wave stress.
T Sout(idUbot) Write out bed wave orbital U-velocity.
T Sout(idVbot) Write out bed wave orbital V-velocity.
T Sout(idUbur) Write out bottom U-velocity above bed.
T Sout(idVbvr) Write out bottom V-velocity above bed.
T Sout(idWamp) Write out wave height.
T Sout(idWlen) Write out wave length.
T Sout(idWdir) Write out wave direction.
T Sout(idWptp) Write out wave surface period.
T Sout(idWpbt) Write out wave bottom period.
T Sout(idWorb) Write out wave bottom orbital velocity.
T Sout(idWdis) Write out wave dissipation.
T Sout(idBott) Write out bottom property 01: grain_diameter
T Sout(idBott) Write out bottom property 02: grain_density
T Sout(idBott) Write out bottom property 03: settling_vel
T Sout(idBott) Write out bottom property 04: erosion_stress
T Sout(idBott) Write out bottom property 05: ripple_length
T Sout(idBott) Write out bottom property 06: ripple_height
T Sout(idBott) Write out bottom property 07: bed_wave_amp
T Sout(idBott) Write out bottom property 08: Zo_def
T Sout(idBott) Write out bottom property 09: Zo_app
T Sout(idBott) Write out bottom property 10: Zo_Nik
T Sout(idBott) Write out bottom property 11: Zo_bio
T Sout(idBott) Write out bottom property 12: Zo_bedform
T Sout(idBott) Write out bottom property 13: Zo_bedload
T Sout(idBott) Write out bottom property 14: Zo_wbl
T Sout(idBott) Write out bottom property 15: active_layer_thickness
T Sout(idBott) Write out bottom property 16: saltation
T Sout(idBott) Write out bottom property 17: bed_inund_depth
T Sout(idBott) Write out bottom property 18: dep_net
T Sout(idVvis) Write out vertical viscosity coefficient.
T Sout(idMtke) Write out turbulent kinetic energy.
T Sout(idMtls) Write out turbulent generic length-scale.
Flag and positions for station 0001: 0 38.0000 25.0000
Flag and positions for station 0002: 0 38.0000 35.0000
Flag and positions for station 0003: 0 38.0000 45.0000
Lateral Boundary Conditions: NLM
============================
Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------
zeta 1 Gradient Clamped Gradient Closed
ubar 1 Gradient Reduced Gradient Closed
vbar 1 Gradient Reduced Gradient Closed
u 1 Gradient Reduced Gradient Closed
v 1 Gradient Reduced Gradient Closed
temp 1 Gradient Gradient Gradient Closed
salt 1 Gradient Gradient Gradient Closed
mud_01 1 Gradient Gradient Gradient Closed
tke 1 Gradient Gradient Gradient Closed
ubar_stokes 1 Gradient Gradient Gradient Closed
vbar_stokes 1 Gradient Gradient Gradient Closed
u_stokes 1 Gradient Gradient Gradient Closed
v_stokes 1 Gradient Gradient Gradient Closed
Activated C-preprocessing Options:
IDEALIZED_MOUNT_HOPEIdealized Mount Hope
ANA_BPFLUX Analytical bottom passive tracers fluxes.
ANA_BSFLUX Analytical kinematic bottom salinity flux.
ANA_BTFLUX Analytical kinematic bottom temperature flux.
ANA_FSOBC Analytical free-surface boundary conditions.
ANA_INITIAL Analytical initial conditions.
ANA_M2OBC Analytical 2D momentum boundary conditions.
ANA_SEDIMENT Analytical sediment initial conditions.
ANA_SMFLUX Analytical kinematic surface momentum flux.
ANA_SPFLUX Analytical surface passive tracer fluxes.
ANA_SSFLUX Analytical kinematic surface salinity flux.
ANA_STFLUX Analytical kinematic surface temperature flux.
ASSUMED_SHAPE Using assumed-shape arrays.
AVERAGES Writing out time-averaged nonlinear model fields.
DIAGNOSTICS_UV Computing and writing momentum diagnostic terms.
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002).
DOUBLE_PRECISION Double precision arithmetic.
GLS_MIXING Generic Length-Scale turbulence closure.
KANTHA_CLAYSON Kantha and Clayson stability function formulation.
MASKING Land/Sea masking.
MCT_LIB Using Model Coupling Toolkit library.
MIX_S_UV Mixing of momentum along constant S-surfaces.
MPI MPI distributed-memory configuration.
WEC_VF Vortex Force wave current interaction.
WDISS_WAVEMOD Wave energy dissipation acquired from coupled wave model.
NONLINEAR Nonlinear Model.
!NONLIN_EOS Linear Equation of State for seawater.
N2S2_HORAVG Horizontal smoothing of buoyancy and shear.
POWER_LAW Power-law shape time-averaging barotropic filter.
PROFILE Time profiling activated .
K_GSCHEME Third-order upstream advection of TKE fields.
RI_SPLINES Parabolic Spline Reconstruction for Richardson Number.
!RST_SINGLE Double precision fields in restart NetCDF file.
SEDIMENT Cohesive and noncohesive sediments.
SED_MORPH Allow bottom model elevation to evolve.
SUSPLOAD Activate suspended sediment transport.
NONCOHESIVE_BED1 Activate non-cohesive (original) sediment bed.
SOLVE3D Solving 3D Primitive Equations.
SPLINES_VDIFF Parabolic Spline Reconstruction for Vertical Diffusion.
SPLINES_VVISC Parabolic Spline Reconstruction for Vertical Viscosity.
SSW_BBL Styles and Glenn Bottom Boundary Layer - modified.
SSW_CALC_ZNOT Internal computation of bottom roughness.
STATIONS Writing out station data.
SWAN_COUPLING SWAN model coupling.
TS_MPDATA Recursive flux corrected MPDATA 3D advection of tracers.
UV_ADV Advection of momentum.
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum.
UV_C4VADVECTION Fourth-order centered vertical advection of momentum.
UV_KIRBY Compute uwave and vwave Kirby avg velocities.
UV_VIS2 Harmonic mixing of momentum.
VAR_RHO_2D Variable density barotropic mode.
WAVES_OCEAN Two-way wave-ocean models coupling.
Process Information:
Node # 21 (pid= 7059) is active.
Node # 23 (pid= 7061) is active.
Node # 7 (pid= 7045) is active.
Node # 13 (pid= 7051) is active.
Node # 15 (pid= 7053) is active.
Node # 25 (pid= 7063) is active.
Node # 27 (pid= 7065) is active.
Node # 29 (pid= 7067) is active.
Node # 31 (pid= 7069) is active.
Node # 1 (pid= 7039) is active.
Node # 3 (pid= 7041) is active.
Node # 5 (pid= 7043) is active.
Node # 9 (pid= 7047) is active.
Node # 11 (pid= 7049) is active.
Node # 17 (pid= 7055) is active.
Node # 19 (pid= 7057) is active.
Node # 0 (pid= 7038) is active.
Node # 22 (pid= 7060) is active.
Node # 28 (pid= 7066) is active.
Node # 4 (pid= 7042) is active.
Node # 6 (pid= 7044) is active.
Node # 8 (pid= 7046) is active.
Node # 12 (pid= 7050) is active.
Node # 14 (pid= 7052) is active.
Node # 18 (pid= 7056) is active.
Node # 20 (pid= 7058) is active.
Node # 26 (pid= 7064) is active.
Node # 16 (pid= 7054) is active.
Node # 30 (pid= 7068) is active.
Node # 2 (pid= 7040) is active.
Node # 10 (pid= 7048) is active.
Node # 24 (pid= 7062) is active.
INITIAL: Configuring and initializing forward nonlinear model ...
*******
Vertical S-coordinate System, Grid 01:
level S-coord Cs-curve Z at hmin at hc half way at hmax
8 0.0000000 0.0000000 0.000 0.000 0.000 0.000
7 -0.1250000 -0.1122656 13.125 13.125 6.108 -0.908
6 -0.2500000 -0.2350037 26.250 26.250 11.562 -3.125
5 -0.3750000 -0.3654529 39.375 39.375 16.534 -6.307
4 -0.5000000 -0.5000000 52.500 52.500 21.250 -10.000
3 -0.6250000 -0.6345471 65.625 65.625 25.966 -13.693
2 -0.7500000 -0.7649963 78.750 78.750 30.938 -16.875
1 -0.8750000 -0.8877344 91.875 91.875 36.392 -19.092
0 -1.0000000 -1.0000000 105.000 105.000 42.500 -20.000
Time Splitting Weights for Grid 01: ndtfast = 20 nfast = 29
==================================
Primary Secondary Accumulated to Current Step
1-0.0009651193358779 0.0500000000000000-0.0009651193358779 0.0500000000000000
2-0.0013488780126037 0.0500482559667939-0.0023139973484816 0.1000482559667939
3-0.0011514592651645 0.0501156998674241-0.0034654566136460 0.1501639558342179
4-0.0003735756740661 0.0501732728306823-0.0038390322877122 0.2003372286649002
5 0.0009829200513762 0.0501919516143856-0.0028561122363360 0.2505291802792858
6 0.0029141799764308 0.0501428056118168 0.0000580677400948 0.3006719858911026
7 0.0054132615310267 0.0499970966129952 0.0054713292711215 0.3506690825040978
8 0.0084687837865132 0.0497264335364439 0.0139401130576347 0.4003955160405417
9 0.0120633394191050 0.0493029943471183 0.0260034524767397 0.4496985103876600
10 0.0161716623600090 0.0486998273761630 0.0421751148367486 0.4983983377638230
11 0.0207585511322367 0.0478912442581626 0.0629336659689853 0.5462895820219856
12 0.0257765478740990 0.0468533167015507 0.0887102138430843 0.5931428987235363
13 0.0311633730493853 0.0455644893078458 0.1198735868924696 0.6387073880313821
14 0.0368391158442262 0.0440063206553765 0.1567127027366958 0.6827137086867585
15 0.0427031802506397 0.0421643648631652 0.1994158829873354 0.7248780735499237
16 0.0486309868367616 0.0400292058506332 0.2480468698240970 0.7649072794005569
17 0.0544704302037591 0.0375976565087951 0.3025173000278562 0.8025049359093520
18 0.0600380921294285 0.0348741349986072 0.3625553921572847 0.8373790709079592
19 0.0651152103984763 0.0318722303921358 0.4276706025557610 0.8692513013000949
20 0.0694434033194839 0.0286164698722119 0.4971140058752449 0.8978677711723068
21 0.0727201499285569 0.0251442997062377 0.5698341558038018 0.9230120708785445
22 0.0745940258796570 0.0215082922098099 0.6444281816834588 0.9445203630883544
23 0.0746596950216180 0.0177785909158270 0.7190878767050768 0.9622989540041814
24 0.0724526566618460 0.0140456061647461 0.7915405333669228 0.9763445601689276
25 0.0674437485167025 0.0104229733316538 0.8589842818836253 0.9867675335005814
26 0.0590334053485720 0.0070507859058187 0.9180176872321973 0.9938183194064002
27 0.0465456732896125 0.0040991156383901 0.9645633605218099 0.9979174350447904
28 0.0292219798521905 0.0017718319739095 0.9937853403740005 0.9996892670186999
29 0.0062146596259994 0.0003107329813000 0.9999999999999999 0.9999999999999999
ndtfast, nfast = 20 29 nfast/ndtfast = 1.45000
Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):
1.000000000000 1.060707743385 0.530353871693 1.000000000000 1.000000000000
Power filter parameters, Fgamma, gamma = 0.28400 0.14200
Metrics information for Grid 01:
===============================
Minimum X-grid spacing, DXmin = 5.00000000E-02 km
Maximum X-grid spacing, DXmax = 5.00000000E-02 km
Minimum Y-grid spacing, DYmin = 5.00000000E-02 km
Maximum Y-grid spacing, DYmax = 5.00000000E-02 km
Minimum Z-grid spacing, DZmin = -1.31250000E+01 m
Maximum Z-grid spacing, DZmax = 3.69338142E+00 m
Minimum barotropic Courant Number = 1.18854533E+00
Maximum barotropic Courant Number = 2.72329947E+00
Maximum Coriolis Courant Number = 1.37347242E-05
Basin information for Grid 01:
Maximum grid stiffness ratios: rx0 = 2.126761E+00 (Beckmann and Haidvogel)
rx1 = 3.090640E+01 (Haney)
Initial basin volumes: TotVolume = -1.6199375000E+08 m3
MinVolume = -3.2812500000E+04 m3
MaxVolume = 9.2334535457E+03 m3
Max/Min = -2.8140048901E-01
** ROMS grid 1 recv data from SWAN grid 1
== SWAN grid 1 sent wave data to ROMS grid 1
SWANtoROMS Min/Max DISBOT (Wm-2): 0.000000E+00 0.000000E+00
SWANtoROMS Min/Max DISSURF (Wm-2): 0.000000E+00 0.000000E+00
SWANtoROMS Min/Max DISWCAP (Wm-2): 0.000000E+00 0.000000E+00
SWANtoROMS Min/Max HSIGN (m): 0.000000E+00 2.006879E-02
SWANtoROMS Min/Max RTP (s): 0.000000E+00 1.903654E+00
SWANtoROMS Min/Max TMBOT (s): 0.000000E+00 3.071143E+00
SWANtoROMS Min/Max UBOT (ms-1): 0.000000E+00 3.127606E-07
SWANtoROMS Min/Max DIR (deg): 0.000000E+00 1.413716E+00
SWANtoROMS Min/Max WLEN (m): 1.000000E+00 3.120065E+00
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
forrtl: error (65): floating invalid
Image PC Routine Line Source
coawstG 0000000000447396 ocean_coupler_mod 634 ocean_coupler.f90
coawstG 00000000004426E1 ocean_coupler_mod 442 ocean_coupler.f90
coawstG 000000000047EF62 initial_ 381 initial.f90
coawstG 000000000043CBA8 ocean_control_mod 142 ocean_control.f90
coawstG 000000000043BA6D MAIN__ 204 master.f90
coawstG 00000000004396FC Unknown Unknown Unknown
libc.so.6 000000321461D994 Unknown Unknown Unknown
coawstG 0000000000439609 Unknown Unknown Unknown
--------------------------------------------------------------------------
mpirun noticed that process rank 16 with PID 7054 on node compute-0-5.local exited on signal 6 (Aborted).
--------------------------------------------------------------------------
Code: Select all
1
Execution started at 20171007.135134
---------------------------------------
SWAN
SIMULATION OF WAVES IN NEAR SHORE AREAS
VERSION NUMBER 41.01AB
---------------------------------------
PROJECT 'Idealized' '01'
'Idealized Mount Hope'
'Bathymetry: flat bottom'
'COMMENTS'
MODE NONSTATIONARY TWODIMENSIONAL
SET DEPMIN 0.10 INRHOG 1 NAUTICAL
COORDINATES CARTESIAN
&& KEYWORD for number of nested SWAN grids.
NSGRIDS 1
&& KEYWORDS TO CREATE AND READ COMPUTATIONAL GRID &&
CGRID CURVILINEAR 99 399 EXC 9.999000e+003 &
CIRCLE 36 0.04 1.0 20
Resolution in sigma-space: df/f = 0.1746
READGRID COORDINATES 1 '/home/zhou/COAWST/Projects/Idealized_Mount_Hope/swan_coord.grd' 4 0 0 FREE
&& KEYWORDS TO CREATE AND READ BATHYMETRY GRID &&
INPGRID BOTTOM CURVILINEAR 0 0 99 399 EXC 9.999000e+003
READINP BOTTOM 1 '/home/zhou/COAWST/Projects/Idealized_Mount_Hope/swan_bathy.bot' 4 0 FREE
&& KEYWORD TO CREATE CURRENT GRID &&
INPGRID CURRENT CURVILINEAR 0 0 99 399 EXC 9.999000e+003 &
NONSTAT 20000101.000000 25 DAY 20000126.000000
&& KEYWORD TO CREATE WATER LEVEL GRID &&
INPGRID WLEV CURVILINEAR 0 0 59 399 EXC 9.999000e+003 &
NONSTAT 20000101.000000 25 DAY 20000126.000000
&& KEYWORD TO CREATE BOTTOM FRICTION GRID &&
INPGRID FRIC CURVILINEAR 0 0 99 399 EXC 9.999000e+003 &
NONSTAT 20000101.000000 25 DAY 20000126.000000
&& BOUNDARY FORCING &&
BOUNDPAR1 SHAPESPEC JONSWAP 3.3 PEAK DSPR DEGREES
BOUNDPAR2 SEGMENT IJ 0 399 99 399 CONSTANT PAR 1.0 10.0 0. 20.
** Warning : No points on the boundaries found
& Restart name **********************************
&INIT HOTSTART 'swan_mount_hope_rst.dat'
& PHYSICS **************************************
GEN3
FRICTION MADSEN 0.05
OFF QUAD
BLOCK 'COMPGRID' NOHEADER 'depth.mat' LAY 4 DEPTH 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'watlev.mat' LAY 4 WATLEV 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'botlev.mat' LAY 4 BOTLEV 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'vel.mat' LAY 4 VEL 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'fric.mat' LAY 4 FRCOEF 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'dissip.mat' LAY 4 DISSIP 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'hsig.mat' LAY 4 HSIGN 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'rtp.mat' LAY 4 RTP 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'tmbot.mat' LAY 4 TMBOT 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'ubot.mat' LAY 4 UBOT 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'wdir.mat' LAY 4 DIR 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'wdirbot.mat' LAY 4 DIRBOT 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'wlen.mat' LAY 4 WLEN 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'qb.mat' LAY 4 QB 1. OUTPUT 20000101.000000 1 HR
BLOCK 'COMPGRID' NOHEADER 'xp.mat' LAY 4 XP 1.
BLOCK 'COMPGRID' NOHEADER 'yp.mat' LAY 4 YP 1.
BLOCK 'COMPGRID' NOHEADER 'hsig.nc' LAY 4 HSIGN 1. OUTPUT 20000101.000000 1 HR
POINTS 'point1' 5000.0 10000.0
SPECOUT 'point1' SPEC2D 'point1.spc2d' OUTPUT 20000101.000000 1 HR
TABLE 'point1' HEADER 'point1.table' HSIGN DIR DIRBOT WLEN OUTPUT 20000101.000000 1 HR
PROP BSBT
RESTART 'swan_mount_hope_rst.dat' FREE 1 HR
COMPUTE NONSTATIONARY 20000101.000000 60 SEC 20000101.120000
** Warning : (corner)point outside comp. grid
Set of output locations: point1 coordinates: 5000.00 10000.00
** Warning : Limiter is de-activated in case of no quadruplets
Time of computation -> 20000101.000100 in sec: 60.