Hello,
I'm having a difficulty running ROMS on a cluster (compiled using pgi). I created a set of idealized NetCDF forcing files which are all one dimensional time series. When I run ROMS I get to the first time step and it seems to hang.
(File: espresso_2005mar_ini_alongcoast.nc, Rec=0001, Index=1)
- free-surface
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- potential temperature
(Min = 2.91731501E+00 Max = 1.01282082E+01)
- salinity
(Min = 3.07004986E+01 Max = 3.44343071E+01)
GET_NGFLD - tidal period
(Min = 1.49047200E+04 Max = 9.29494800E+04)
GET_2DFLD - tidal elevation amplitude
(Min = 0.00000000E+00 Max = 8.48837973E-01)
GET_2DFLD - tidal elevation phase angle
(Min = -3.14156674E+00 Max = 3.14157679E+00)
GET_2DFLD - tidal current inclination angle
(Min = 0.00000000E+00 Max = 6.28317331E+00)
GET_2DFLD - tidal current phase angle
(Min = 0.00000000E+00 Max = 6.28317561E+00)
GET_2DFLD - maximum tidal current, ellipse major axis
(Min = 0.00000000E+00 Max = 7.32348033E-01)
GET_2DFLD - minimum tidal current, ellipse minor axis
(Min = -1.31822527E-01 Max = 3.10740618E-02)
GET_NGFLD - river runoff XI-positions at RHO-points
(Min = 4.50000000E+01 Max = 1.91000000E+02)
GET_NGFLD - river runoff ETA-positions at RHO-points
(Min = 1.37000000E+02 Max = 1.39000000E+02)
GET_NGFLD - river runoff direction
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_NGFLD - river runoff mass transport vertical profile
(Min = 0.00000000E+00 Max = 6.66666701E-02)
GET_NGFLD - river runoff flag
(Min = 3.00000000E+00 Max = 3.00000000E+00)
GET_NGFLD - river runoff mass transport, t = 74.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0080, Index=2)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = -5.00000000E+02 Max = -5.00000000E+02)
GET_NGFLD - river runoff potential temperature, t = 74.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0080, Index=2)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = 2.27676725E+00 Max = 2.27676725E+00)
GET_NGFLD - river runoff salinity, t = 74.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0080, Index=2)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - surface u-wind component, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Uwindb.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - surface v-wind component, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Vwind.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - solar shortwave radiation flux, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Swrf.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - downwelling longwave radiation flux, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Lwrf.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 2.43303871E+02 Max = 2.43303871E+02)
GET_2DFLD - surface air pressure, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Pair.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 1.01675950E+03 Max = 1.01675950E+03)
GET_2DFLD - surface air temperature, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Tair.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 7.30472136E+00 Max = 7.30472136E+00)
GET_2DFLD - surface air relative humidity, t = 74.0000
(File: LATTE05_ROMS_forcing_ideal_Qair.nc, Rec=0041, Index=1)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 7.25540858E+01 Max = 7.25540858E+01)
Maximum grid stiffness ratios: rx0 = 3.514066E-01 (Beckmann and Haidvogel)
rx1 = 1.079171E+01 (Haney)
Initial basin volumes: TotVolume = 1.24886956691254E+12 m3
MinVolume = 2.09304067898471E+05 m3
MaxVolume = 1.14817682241530E+07 m3
Max/Min = 5.48568804201294E+01
NL ROMS/TOMS: started time-stepping:( TimeSteps: 00000001 - 00000300)
GET_NGFLD - river runoff mass transport, t = 75.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0081, Index=1)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = -5.00000000E+02 Max = -5.00000000E+02)
GET_NGFLD - river runoff potential temperature, t = 75.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0081, Index=1)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = 2.47702694E+00 Max = 2.47702694E+00)
GET_NGFLD - river runoff salinity, t = 75.0000
(File: roms_hudson_Latte_constant_500_river2005.nc, Rec=0081, Index=1)
(Tmin= -5.0000 Tmax= 347.0000)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - surface u-wind component, t = 74.1250
(File: LATTE05_ROMS_forcing_ideal_Uwindb.nc, Rec=0042, Index=2)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - surface v-wind component, t = 74.1250
(File: LATTE05_ROMS_forcing_ideal_Vwind.nc, Rec=0042, Index=2)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - solar shortwave radiation flux, t = 74.1250
(File: LATTE05_ROMS_forcing_ideal_Swrf.nc, Rec=0042, Index=2)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_2DFLD - downwelling longwave radiation flux, t = 74.1250
(File: LATTE05_ROMS_forcing_ideal_Lwrf.nc, Rec=0042, Index=2)
(Tmin= 69.0000 Tmax= 156.8750)
(Min = 2.40696930
I get nothing after this. Interestingly, If I change the U-wind (yes, I meant U-wind) file to a 2-dimensional file, it runs through just fine. Also, I ran this same configuration serially on windows using cygwin with no problems.
It seems as though I have a netcdf file difficulty. Although I'm not sure why it would run on cygwin but not a cluster.
Thanks,
Eli