Hi, everyone!
I changed the vertical turbulent mixing scheme from gls(k-kl) to MY25, the problem is still existing.
MY25 with U3HADVECTION + C4VADVECTION
The temperature is high on the bottom layer and it is low in the upper layer.
Here's my parameters:
7.5000E+02 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 01: temp
7.5000E+02 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 02: salt
5.0000E+01 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
1.5000E-03 rdrg2 Quadratic bottom drag coefficient.
1.0000E-03 Zob Bottom roughness (m).
1 lmd_Jwt Jerlov water type.
1 Vtransform S-coordinate transformation equation.
1 Vstretching S-coordinate stretching function.
4.0000E+00 theta_s S-coordinate surface control parameter.
4.0000E-01 theta_b S-coordinate bottom control parameter.
10.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.000 tide_start Reference time origin for tidal forcing (days).
20000101.00 time_ref Reference time for units attribute (yyyymmdd.dd)
3.6000E+02 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
3.6000E+02 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
3.6000E+02 Znudg Nudging/relaxation time scale (days)
for free-surface.
3.6000E+02 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
3.6000E+02 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
1.2000E+02 obcfac Factor between passive and active
open boundary conditions.
14.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
Activated C-preprocessing Options:
ADD_FSOBC Adding tidal elevation to proccesed OBC data.
ADD_M2OBC Adding tidal currents to proccesed OBC data.
ANA_BSFLUX Analytical kinematic bottom salinity flux.
ANA_BTFLUX Analytical kinematic bottom temperature flux.
ASSUMED_SHAPE Using assumed-shape arrays.
AVERAGES Writing out time-averaged fields.
CURVGRID Orthogonal curvilinear grid.
DIFF_GRID Horizontal diffusion coefficient scaled by grid size.
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002).
DOUBLE_PRECISION Double precision arithmetic.
EAST_FSCHAPMAN Eastern edge, free-surface, Chapman condition.
EAST_M2FLATHER Eastern edge, 2D momentum, Flather condition.
EAST_M3NUDGING Eastern edge, 3D momentum, passive/active outflow/inflow.
EAST_M3RADIATION Eastern edge, 3D momentum, radiation condition.
EAST_TNUDGING Eastern edge, tracers, passive/active outflow/inflow.
EAST_TRADIATION Eastern edge, tracers, radiation condition.
EAST_VOLCONS Eastern edge, enforce mass conservation.
MASKING Land/Sea masking.
MIX_GEO_TS Mixing of tracers along geopotential surfaces.
MIX_S_UV Mixing of momentum along constant S-surfaces.
MPI MPI distributed-memory configuration.
MY25_MIXING Mellor/Yamada Level-2.5 mixing closure.
NONLINEAR Nonlinear Model.
NONLIN_EOS Nonlinear Equation of State for seawater.
POWER_LAW Power-law shape time-averaging barotropic filter.
PROFILE Time profiling activated .
QCORRECTION Surface net heat flux correction.
K_GSCHEME Third-order upstream advection of TKE fields.
RAMP_TIDES Ramping tidal forcing for one day.
!RST_SINGLE Double precision fields in restart NetCDF file.
SALINITY Using salinity.
SCORRECTION Surface salinity flux correction.
SOLAR_SOURCE Solar Radiation Source Term.
SOLVE3D Solving 3D Primitive Equations.
SOUTH_FSCHAPMAN Southern edge, free-surface, Chapman condition.
SOUTH_M2FLATHER Southern edge, 2D momentum, Flather condition.
SOUTH_M3NUDGING Southern edge, 3D momentum, passive/active outflow/inflow.
SOUTH_M3RADIATION Southern edge, 3D momentum, radiation condition.
SOUTH_TNUDGING Southern edge, tracers, passive/active outflow/inflow.
SOUTH_TRADIATION Southern edge, tracers, radiation condition.
SOUTH_VOLCONS Southern edge, enforce mass conservation.
SPHERICAL Spherical grid configuration.
SSH_TIDES Add tidal elevation to SSH climatology.
TS_U3HADVECTION Third-order upstream horizontal advection of tracers.
TS_C4VADVECTION Fourth-order centered vertical advection of tracers.
TS_DIF2 Harmonic mixing of tracers.
TS_PSOURCE Tracers point sources and sinks.
UV_ADV Advection of momentum.
UV_COR Coriolis term.
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum.
UV_C4VADVECTION Fourth-order centered vertical advection of momentum.
UV_LOGDRAG Logarithmic bottom stress.
UV_PSOURCE Mass point sources and sinks.
UV_TIDES Add tidal currents to 2D momentum climatologies.
UV_VIS2 Harmonic mixing of momentum.
VAR_RHO_2D Variable density barotropic mode.
VISC_3DCOEF Horizontal, time-dependent 3D viscosity coefficient.