I ran a fully 3D simulation of the Chesapeake bay using only tidal forcing (from a tides.nc file containing harmonic constituents) but I maintained T, S constant throughout the simulation via constant T, S initial conditions (there were no other forcings such as bulk fluxes, open boundary forcing, rivers, etc.).
This simulation also had floats in it but I found that although the floats moved around in the horizontal as expected (due to tides) they did not move at all in the vertical! I put the floats at -1.0m, -5.0m and -10.0m (and the ocean bottom was deeper than 10m) but the floats continued to remain at these depths exactly (to 8 or decimal places or more) in time.
When however I write out and look at the w-velocity, I see that it is of the order of 1 mm/s which is not negligible and it also assumes both positive and negative signs. So I expected the particles to have a little vertical movement but did not see any.
The simulation I carried out was for 10-days and I used MPI parallelization.
Has anyone else seen this behavior before?
Strange vertical behavior of floats
My floats.in file looks like:
POS = G, C, T, N, Ft0, Fx0, Fy0, Fz0, Fdt, Fdx, Fdy, Fdz
1 1 1 1 10.041667 -76.46159 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 1 1 10.041667 -76.46145 38.30779 -1.0 0.0 0.0 0.0 0.0
So I have only 1 nested grid (actually I only run on 1 grid - no sub-grids/nests), the particle
locations are specified using spherical coordinates (not grid units), the particles are 3D neutral Lagrangian (and not isobaric) and I release only 1 particle at each location.
Should the time attribute have more decimal places? (my baroclinic timestep is 60 seconds -
0.00069444 days). Also do these numbers (with the exception of the first four) have to be in double precision?
POS = G, C, T, N, Ft0, Fx0, Fy0, Fz0, Fdt, Fdx, Fdy, Fdz
1 1 1 1 10.041667 -76.46159 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 1 1 10.041667 -76.46145 38.30779 -1.0 0.0 0.0 0.0 0.0
So I have only 1 nested grid (actually I only run on 1 grid - no sub-grids/nests), the particle
locations are specified using spherical coordinates (not grid units), the particles are 3D neutral Lagrangian (and not isobaric) and I release only 1 particle at each location.
Should the time attribute have more decimal places? (my baroclinic timestep is 60 seconds -
0.00069444 days). Also do these numbers (with the exception of the first four) have to be in double precision?
In the previous reply I posted, the numbers I cut and pasted are actually spaced apart by about 5 blank spaces each in the floats.in file and are not all together as in the reply. Also, the model application I am running has a true coastline and true bathymetry and is not say a flat-bottom application.
-
m.hadfield
- Posts: 521
- Joined: Tue Jul 01, 2003 4:12 am
- Location: NIWA
The problem is that he didn't want isobaric, but rather 3D neutral Lagrangian. According to the stock float.in files, the options are:
! T Float trajectory type (1: neutral 3D Lagrangian, 2:isobaric)
Investigation of the code shows that there are really three choices, types 1, 2, and other. Who wrote that code and what do they really do?
! T Float trajectory type (1: neutral 3D Lagrangian, 2:isobaric)
Investigation of the code shows that there are really three choices, types 1, 2, and other. Who wrote that code and what do they really do?
-
arango
- Site Admin
- Posts: 1367
- Joined: Wed Feb 26, 2003 4:41 pm
- Location: DMCS, Rutgers University
- Contact:
If you check the source code in trac, you will notice that all the input script for the float are correct and consistent with step_floats.F:
So Kate's input scripts are very old and out of date. I did correct the documentation in mod_floats.F and closed the trac ticket.
The problem that Lyon is having is due to he is activating TS_FIXED. This option is intended to be run for just a short time and not for 10 days. The model needs to be run with wind forcing to get the geostrophic and Ekman balances in momentum. If the application has tidal forcing, it complicates things further. It doesn't make sense to run the floats when the TS_FIXED is activated. If a uniform velocity field is desired to compute the float trajectories or a streamfunction, this needs to be done outside of ROMS.
By the way, we are looking into ways to compute the streamfunction inside ROMS. It will involve solving a minimization problem. Boundary condition for the elliptic problem are not required. This will be available in the future.
Code: Select all
! T Float trajectory type (1: neutral 3D Lagrangian, 2:isobaric)
...
! T Float trajectory type [Ftype]:
!
! Ftype = 1, neutral density 3D Lagrangian particles.
!
! Ftype = 2, isobaric (constant depth) floats.
The problem that Lyon is having is due to he is activating TS_FIXED. This option is intended to be run for just a short time and not for 10 days. The model needs to be run with wind forcing to get the geostrophic and Ekman balances in momentum. If the application has tidal forcing, it complicates things further. It doesn't make sense to run the floats when the TS_FIXED is activated. If a uniform velocity field is desired to compute the float trajectories or a streamfunction, this needs to be done outside of ROMS.
By the way, we are looking into ways to compute the streamfunction inside ROMS. It will involve solving a minimization problem. Boundary condition for the elliptic problem are not required. This will be available in the future.
Last edited by arango on Fri May 23, 2008 8:21 pm, edited 1 time in total.
I was referring to the actual code in step_floats.F:
IF ((Ftype(l).eq.1).or.(Ftype(l).eq.2)) THEN
! stuff to find z_w at float locations
IF (Ftype(l).eq.1) THEN
zfloat=Fz0(l)
ELSEIF (Ftype(l).eq.2) THEN
zfloat=Fz0(l)+cff9
END IF
! more stuff with z_w
ELSE
! stuff without z_w
END IF
For a 3-D Lagrangian, you don't need z_w so I think that falls in the "else" case.
IF ((Ftype(l).eq.1).or.(Ftype(l).eq.2)) THEN
! stuff to find z_w at float locations
IF (Ftype(l).eq.1) THEN
zfloat=Fz0(l)
ELSEIF (Ftype(l).eq.2) THEN
zfloat=Fz0(l)+cff9
END IF
! more stuff with z_w
ELSE
! stuff without z_w
END IF
For a 3-D Lagrangian, you don't need z_w so I think that falls in the "else" case.
I did not use the TS_FIXED option. All that I did was to :
(1) use T=15, S=35 globally in my initial conditions file,
(2) have NO atmospheric, river or open boundary T, S forcing (OB T, S are radiation),
(3) include tides and use FS_REDUCED, SSH_TIDES and M2_REDUCED
I then just all the fields (u, v, ubar, vbar, zeta, T, S) evolve in time by time stepping the ROMS and T, S remain fixed thoughout the model domain at their initial values (T=15, S=35) for all time; this is indeed the expected behavior.
I then find that with C=0 or C=1, if T=1, there is no vertical movement of the particles what so ever (I put particles at depths of -1m, -5m, -10m). If T=0, then, particles do move in the vertical but there is something really wrong because if I look at the initial locations of the particles they are way off their initial locations (-1m, -5m -10m) even after just one single time step!!! So the vertical migration and locations of the particles are messed up right from the beginning.
When also I look closely at the horizontal locations of the particles, for C=1, they too are messed up and whole segments of the population just stay put and do not move at all! If however, I choose to give the particle locations as fractional (I, J) indices (C=0) instead, then the particles move as expected. So to do a patch of particles, do we need to use C=0 and give the initial particle locations as fractional (I,J) and NOT use C=1 where we need to give the locations as (lon,lat)? Perhaps my patch size is too small in lon-lat space - I have a patch that is ~500m x 500m and I put 32 x 32 particles inside this patch. I had to choose this patch size in order to simulate/complement a real-life observational experiment that some colleagues are carrying out in the Chesapeake Bay using AUVs.
I examined the above particle behavior in both serial and MPI and I get the same results and so its not a parallel issue.
However, I must say that the above experiments were all done from a perfect restart and I used the PERFECT_RESTART CPP option. So what I am now doing is to repeat the above experiments from a cold start/spin-up and see what happens. For all we know, this whole thing could be a restart related issue.
(1) use T=15, S=35 globally in my initial conditions file,
(2) have NO atmospheric, river or open boundary T, S forcing (OB T, S are radiation),
(3) include tides and use FS_REDUCED, SSH_TIDES and M2_REDUCED
I then just all the fields (u, v, ubar, vbar, zeta, T, S) evolve in time by time stepping the ROMS and T, S remain fixed thoughout the model domain at their initial values (T=15, S=35) for all time; this is indeed the expected behavior.
I then find that with C=0 or C=1, if T=1, there is no vertical movement of the particles what so ever (I put particles at depths of -1m, -5m, -10m). If T=0, then, particles do move in the vertical but there is something really wrong because if I look at the initial locations of the particles they are way off their initial locations (-1m, -5m -10m) even after just one single time step!!! So the vertical migration and locations of the particles are messed up right from the beginning.
When also I look closely at the horizontal locations of the particles, for C=1, they too are messed up and whole segments of the population just stay put and do not move at all! If however, I choose to give the particle locations as fractional (I, J) indices (C=0) instead, then the particles move as expected. So to do a patch of particles, do we need to use C=0 and give the initial particle locations as fractional (I,J) and NOT use C=1 where we need to give the locations as (lon,lat)? Perhaps my patch size is too small in lon-lat space - I have a patch that is ~500m x 500m and I put 32 x 32 particles inside this patch. I had to choose this patch size in order to simulate/complement a real-life observational experiment that some colleagues are carrying out in the Chesapeake Bay using AUVs.
I examined the above particle behavior in both serial and MPI and I get the same results and so its not a parallel issue.
However, I must say that the above experiments were all done from a perfect restart and I used the PERFECT_RESTART CPP option. So what I am now doing is to repeat the above experiments from a cold start/spin-up and see what happens. For all we know, this whole thing could be a restart related issue.
The stdout log reports the computed floats initial conditions, for example:
Do your values look correct according to your floats.in specifications, and do the initial positions in the floats netcdf file agree with these?
Code: Select all
Floats Initial Locations, Grid: 01
==================================
Ft0 Fx0 Fy0 Fz0 Fdt Fdx Fdy Fdz
0 1 12 0.0000 51.00 218.00 1.00 0.043 0.000 0.000 0.000
0 1 12 0.0000 52.00 ... for example
John Wilkin: DMCS Rutgers University
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
I repeated my experiments from a cold start and here is what I found:
(1) the horizontal and vertical positions of the particles are still messed up right from the beginning when I specify the locations as (lon, lat) values (ie. C=1); however,
(2) the horizontal and vertical positions of the particles appear to evolve correctly right from the beginning when I specify the particle locations as fractional (I,J) values (ie. C=0).
The above is true both in serial and MPI.
So I am left with the following questions:
(a) should we always only specify our initial particle locations as fractional (I,J) values?
(b) for ROMS 3.0 what values of T are permitted? Is T=0 (neutral Lagrangian), T=1 (isobaric), T=2 (isopycnal) a correct configurations for ROMS 3.0 or does a different value set for T apply?
Here is a segment of my floats.in where the initial locations are specified as (lon,lat):
and, here is an equivalent in fractional (I,J) coordinates:
(1) the horizontal and vertical positions of the particles are still messed up right from the beginning when I specify the locations as (lon, lat) values (ie. C=1); however,
(2) the horizontal and vertical positions of the particles appear to evolve correctly right from the beginning when I specify the particle locations as fractional (I,J) values (ie. C=0).
The above is true both in serial and MPI.
So I am left with the following questions:
(a) should we always only specify our initial particle locations as fractional (I,J) values?
(b) for ROMS 3.0 what values of T are permitted? Is T=0 (neutral Lagrangian), T=1 (isobaric), T=2 (isopycnal) a correct configurations for ROMS 3.0 or does a different value set for T apply?
Here is a segment of my floats.in where the initial locations are specified as (lon,lat):
Code: Select all
POS = G, C, T, N, Ft0, Fx0, Fy0, Fz0, Fdt, Fdx, Fdy, Fdz
1 1 0 1 5.000000 -76.46159 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46145 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46130 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46115 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46101 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46086 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46072 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46056 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46042 38.30779 -1.0 0.0 0.0 0.0 0.0
1 1 0 1 5.000000 -76.46027 38.30779 -1.0 0.0 0.0 0.0 0.0Code: Select all
POS = G, C, T, N, Ft0, Fx0, Fy0, Fz0, Fdt, Fdx, Fdy, Fdz
1 0 0 1 5.000000 155.00000 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.03000 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.06000 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.09000 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.12000 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.14999 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.17999 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.21001 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.24001 155.30000 -1.0 0.0 0.0 0.0 0.0
1 0 0 1 5.000000 155.27000 155.30000 -1.0 0.0 0.0 0.0 0.0Lyon,
In your email you said:
> I also put T=0 in the floats.in file (as I did not know what else to
> use!). Here is what I found:
The documentation says ...
... so by putting type=0 I don't know what you are likely to get. I'm not super familiar with the floats code, but on input I see no attempt to trap the case the users fail to give Ftype equal to 1 or 2, so you are taking risks picking values that are not defined as options in the documentation.
Certainly, within step_floats.F there are IF tests for type 1 and 2 and if neither is true no action is taken. Using type=0 is not going to help debug this.
I think you need to take the initiative here and look in step_floats.F and figure what it does. It's a pretty concise subroutine.
Looking at the source on myroms.org trac, I notice:
which seems to indicate that Ftype=1 causes no z-position update, which
I would interpret as indicating "isobaric" behaviour. If I'm right, this in contrary to the documentation.
So, yes, there are some issue to settle.
I'd still like to see your stdout. Can you post the logfile on a website where we can browse it (or post the whole darn thing here up until the model starts executing). There are many clues in stdout to all sorts of possible problems.
John.
In your email you said:
> I also put T=0 in the floats.in file (as I did not know what else to
> use!). Here is what I found:
The documentation says ...
Code: Select all
! T Float trajectory type (1: neutral 3D Lagrangian, 2:isobaric)Certainly, within step_floats.F there are IF tests for type 1 and 2 and if neither is true no action is taken. Using type=0 is not going to help debug this.
I think you need to take the initiative here and look in step_floats.F and figure what it does. It's a pretty concise subroutine.
Looking at the source on myroms.org trac, I notice:
Code: Select all
309 !
310 IF (Ftype(l).eq.1) THEN
311 zfloat=Fz0(l)
312 ELSEIF (Ftype(l).eq.2) THEN
313 zfloat=Fz0(l)+cff9
314 END IF
315 !I would interpret as indicating "isobaric" behaviour. If I'm right, this in contrary to the documentation.
So, yes, there are some issue to settle.
I'd still like to see your stdout. Can you post the logfile on a website where we can browse it (or post the whole darn thing here up until the model starts executing). There are many clues in stdout to all sorts of possible problems.
John.
John Wilkin: DMCS Rutgers University
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
Here is my ROMS screen output for particle positions specified as (lon, lat):
Code: Select all
Sun May 25 14:19:20 EDT 2008
Node # 44 (pid= 250120) is active.
Process Information:
Node # 0 (pid= 79254) is active.
Node # 45 (pid= 152800) is active.
Node # 1 (pid= 151706) is active.
Node # 46 (pid= 46826) is active.
Node # 2 (pid= 124678) is active.
Node # 52 (pid= 107760) is active.
Node # 3 (pid= 70684) is active.
Node # 53 (pid= 95348) is active.
Node # 4 (pid= 88040) is active.
Node # 54 (pid= 172520) is active.
Node # 5 (pid= 116582) is active.
Node # 55 (pid= 222574) is active.
Node # 6 (pid= 108194) is active.
Node # 32 (pid= 112164) is active.
Node # 7 (pid= 197878) is active.
Node # 35 (pid= 284514) is active.
Node # 8 (pid= 189906) is active.
Node # 37 (pid= 271130) is active.
Node # 9 (pid= 156328) is active.
Node # 38 (pid= 71182) is active.
Node # 10 (pid= 176980) is active.
Node # 39 (pid= 184408) is active.
Node # 11 (pid= 169292) is active.
Node # 40 (pid= 168570) is active.
Node # 12 (pid= 164202) is active.
Node # 41 (pid= 59224) is active.
Node # 13 (pid= 214704) is active.
Node # 42 (pid= 221632) is active.
Node # 14 (pid= 116348) is active.
Node # 43 (pid= 104196) is active.
Node # 15 (pid= 58676) is active.
Node # 47 (pid= 177264) is active.
Node # 16 (pid= 132316) is active.
Node # 48 (pid= 173550) is active.
Node # 17 (pid= 197554) is active.
Node # 49 (pid= 164524) is active.
Node # 18 (pid= 172934) is active.
Node # 50 (pid= 42576) is active.
Node # 19 (pid= 151842) is active.
Node # 60 (pid= 206812) is active.
Node # 20 (pid= 148822) is active.
Node # 61 (pid= 176262) is active.
Node # 21 (pid= 176488) is active.
Node # 62 (pid= 263636) is active.
Node # 22 (pid= 86082) is active.
Node # 63 (pid= 140800) is active.
Node # 23 (pid= 103580) is active.
Node # 33 (pid= 230346) is active.
Node # 24 (pid= 124026) is active.
Node # 34 (pid= 127798) is active.
Node # 25 (pid= 160560) is active.
Node # 51 (pid= 119070) is active.
Node # 26 (pid= 110840) is active.
Node # 56 (pid= 258210) is active.
Node # 27 (pid= 128584) is active.
Node # 57 (pid= 164122) is active.
Node # 28 (pid= 156762) is active.
Node # 58 (pid= 107478) is active.
Node # 29 (pid= 250230) is active.
Node # 59 (pid= 221234) is active.
Node # 30 (pid= 63162) is active.
Node # 36 (pid= 173832) is active.
Node # 31 (pid= 55144) is active.
Model Input Parameters: ROMS/TOMS version 3.0
Sunday - May 25, 2008 - 2:19:22 PM
-----------------------------------------------------------------------------
Chesapeake Bay Operational Forecast System - 2
Operating system : AIX
CPU/hardware : 00C88D5D4C00
Compiler system : xlf
Compiler command : mpxlf95_r
Compiler flags : -qsuffix=f=f90 -qmaxmem=-1 -qarch=pwr4 -qtune=pwr4 -q64 -O -qstrict -qfree
Input Script : toms_debug_coldstartd.in
SVN Root URL : https://www.myroms.org/svn/src/trunk
SVN Revision :
Local Root : /gpfs/d/marine/save/wx21ll/ROMS_MMAP_Final
Header Dir : ./ROMS/Include
Header file : cbofs2.h
Analytical Dir: /gpfs/d/marine/save/wx21ll/ROMS_MMAP_Final/ROMS/Functionals
Resolution, Grid 01: 0330x0289x020, Parallel Nodes: 64, Tiling: 008x008
Physical Parameters, Grid: 01
=============================
14400 ntimes Number of timesteps for 3-D equations.
3.000 dt Timestep size (s) for 3-D equations.
20 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
360 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
6 nSTA Number of timesteps between the writing of data
the stations file.
1 nFLT Number of timesteps between the writing of data
into floats file.
T ldefout Switch to create a new output NetCDF file(s).
1440 nHIS Number of timesteps between the writing fields
into history file.
2.0000E-08 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
2.0000E-08 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
2.0000E-08 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
2.0000E-08 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
2.0000E-08 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
0.0000E+00 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
0.0000E+00 Zob Bottom roughness (m).
4.5000E+00 theta_s S-coordinate surface control parameter.
9.5000E-01 theta_b S-coordinate bottom control parameter.
10.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
136.000 dstart Time-stamp assigned to model initialization (days).
0.000 tide_start Reference time origin for tidal forcing (days).
20080101.00 time_ref Reference time for units attribute (yyyymmdd.dd)
0.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
0.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
14.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
Output/Input Files:
Output Restart File: ocean_rst_AUV_debugd.nc
Output History File: ocean_his_AUV_debugd.nc
Output Stations File: ocean_sta_AUV_debugd.nc
Output Floats File: ocean_flt_AUV_debugd.nc
Input Grid File: CBOFS2_grid_2mcut.nc
Input Nonlinear Initial File: CBOFS2_ini_constTS.nc
Station positions File: stations.in
Initial Floats Positions File: floats_debugd.in
Tile partition information for Grid 01: 0330x0289x0020 tiling: 008x008
tile Istr Iend Jstr Jend Npts
0 1 39 1 34 26520
1 40 81 1 34 28560
2 82 123 1 34 28560
3 124 165 1 34 28560
4 166 207 1 34 28560
5 208 249 1 34 28560
6 250 291 1 34 28560
7 292 330 1 34 26520
8 1 39 35 71 28860
9 40 81 35 71 31080
10 82 123 35 71 31080
11 124 165 35 71 31080
12 166 207 35 71 31080
13 208 249 35 71 31080
14 250 291 35 71 31080
15 292 330 35 71 28860
16 1 39 72 108 28860
17 40 81 72 108 31080
18 82 123 72 108 31080
19 124 165 72 108 31080
20 166 207 72 108 31080
21 208 249 72 108 31080
22 250 291 72 108 31080
23 292 330 72 108 28860
24 1 39 109 145 28860
25 40 81 109 145 31080
26 82 123 109 145 31080
27 124 165 109 145 31080
28 166 207 109 145 31080
29 208 249 109 145 31080
30 250 291 109 145 31080
31 292 330 109 145 28860
32 1 39 146 182 28860
33 40 81 146 182 31080
34 82 123 146 182 31080
35 124 165 146 182 31080
36 166 207 146 182 31080
37 208 249 146 182 31080
38 250 291 146 182 31080
39 292 330 146 182 28860
40 1 39 183 219 28860
41 40 81 183 219 31080
42 82 123 183 219 31080
43 124 165 183 219 31080
44 166 207 183 219 31080
45 208 249 183 219 31080
46 250 291 183 219 31080
47 292 330 183 219 28860
48 1 39 220 256 28860
49 40 81 220 256 31080
50 82 123 220 256 31080
51 124 165 220 256 31080
52 166 207 220 256 31080
53 208 249 220 256 31080
54 250 291 220 256 31080
55 292 330 220 256 28860
56 1 39 257 289 25740
57 40 81 257 289 27720
58 82 123 257 289 27720
59 124 165 257 289 27720
60 166 207 257 289 27720
61 208 249 257 289 27720
62 250 291 257 289 27720
63 292 330 257 289 25740
Maximum halo size in XI and ETA directions:
HaloSizeI(1) = 104
HaloSizeJ(1) = 94
TileSide(1) = 46
TileSize(1) = 1886
Floats Initial Locations, Grid: 01
==================================
Ft0 Fx0 Fy0 Fz0 Fdt Fdx Fdy Fdz
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Your "logfile" posting, lengthy as it is, cuts off before the CPP options report or the information from GET_STATE.
John Wilkin: DMCS Rutgers University
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
71 Dudley Rd, New Brunswick, NJ 08901-8521, USA. ph: 609-630-0559 jwilkin@rutgers.edu
ok. i had my hands in here.
I think this is the correct way:
T Float trajectory type :
0: neutral 3D Lagrangian - the drifter is advected vertically.
1: isobaric - the drifter stays at the same depth. So if it is released at z=-5 m, then it stays at z=-5 m. It does not matter what zeta is doing, the drifter stays at z=-5 m.
2: isopycnal (?terminoloogy) - the drifter stays at the same elevation below the free surface. Let's say you release the drifter at z=-5, and at that time zeta =0. If the tide comes in, and zeta increases to +1, then the drifter goes to z=-4, because it will still then be 5 m below the free surface.
I just tested this in LAKE_SIGNELL.
Can we add this description to the wiki, and then modify the text there so that we don't ever have to revisit this again?
On the issue of why the first time step gives 1e35 values:
I think there needs to be some code added to
ROMS/Utility/grid_coords.F
It needs something like
track(ixgrd,0:NFT,l)=Tinfo(ixgrd,l)
track(iygrd,0:NFT,l)=Tinfo(iygrd,l)
track(izgrd,0:NFT,l)=Tinfo(izgrd,l)
to store the original locations into the global trajectory arrays.
I did not test the lon/lat release issue. I ran lake_signell (which, for whatever reason, uses x - y coords).
I think this is the correct way:
T Float trajectory type :
0: neutral 3D Lagrangian - the drifter is advected vertically.
1: isobaric - the drifter stays at the same depth. So if it is released at z=-5 m, then it stays at z=-5 m. It does not matter what zeta is doing, the drifter stays at z=-5 m.
2: isopycnal (?terminoloogy) - the drifter stays at the same elevation below the free surface. Let's say you release the drifter at z=-5, and at that time zeta =0. If the tide comes in, and zeta increases to +1, then the drifter goes to z=-4, because it will still then be 5 m below the free surface.
I just tested this in LAKE_SIGNELL.
Can we add this description to the wiki, and then modify the text there so that we don't ever have to revisit this again?
On the issue of why the first time step gives 1e35 values:
I think there needs to be some code added to
ROMS/Utility/grid_coords.F
It needs something like
track(ixgrd,0:NFT,l)=Tinfo(ixgrd,l)
track(iygrd,0:NFT,l)=Tinfo(iygrd,l)
track(izgrd,0:NFT,l)=Tinfo(izgrd,l)
to store the original locations into the global trajectory arrays.
I did not test the lon/lat release issue. I ran lake_signell (which, for whatever reason, uses x - y coords).