Thank you jcwarner.
I compiled the romM with default setting of Forward in Lake_jersey folder, then try using my own grid and ini condition (attached .nc files
). run the default .in file in the folder then Roms gave me this stdout:
Code: Select all
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Model Input Parameters: ROMS/TOMS version 3.9
Tuesday - August 25, 2020 - 8:38:30 AM
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Lake Jersey nesting test case with top-right refined grid
Operating system : Linux
CPU/hardware : x86_64
Compiler system : gfortran
Compiler command : /usr/bin/mpif90
Compiler flags : -frepack-arrays -O3 -ffast-math -
OCN Communicator : 0, PET size = 3
Input Script : roms_lake_jersey.in
SVN Root URL : https://www.myroms.org/svn/src/trunk
SVN Revision : 1037
Local Root : /home/bangdt/200820/trunk
Header Dir : /home/bangdt/200820/test/lake_jersey/Forward
Header file : lake_jersey.h
Analytical Dir : /home/bangdt/200820/test/lake_jersey/Forward
Resolution, Grid 01: 100x80x8, Parallel Nodes: 3, Tiling: 1x3
Physical Parameters, Grid: 01
=============================
1440 ntimes Number of timesteps for 3-D equations.
120.000 dt Timestep size (s) for 3-D equations.
30 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
60 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
15 nHIS Number of timesteps between the writing fields
into history file.
0 nQCK Number of timesteps between the writing fields
into quicksave file.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
720 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
5.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
5.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
5.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
0.000 gls_p GLS stability exponent.
1.000 gls_m GLS turbulent kinetic energy exponent.
1.000 gls_n GLS turbulent length scale exponent.
5.0000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy.
5.0000E-06 gls_Pmin GLS minimum value of dissipation.
5.5440E-01 gls_cmu0 GLS stability coefficient.
9.0000E-01 gls_c1 GLS shear production coefficient.
5.2000E-01 gls_c2 GLS dissipation coefficient.
2.5000E+00 gls_c3m GLS stable buoyancy production coefficient.
1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient.
1.9600E+00 gls_sigk GLS constant Schmidt number for TKE.
1.9600E+00 gls_sigp GLS constant Schmidt number for PSI.
1400.000 charnok_alpha Charnok factor for Zos calculation.
0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave).
0.250 sz_alpha Factor for Wave dissipation surface tke flux .
100.000 crgban_cw Factor for Craig/Banner surface tke flux.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
1.5000E-02 Zob Bottom roughness (m).
2.0000E-02 Zos Surface roughness (m).
2 Vtransform S-coordinate transformation equation.
4 Vstretching S-coordinate stretching function.
1.0000E+00 theta_s S-coordinate surface control parameter.
1.0000E+00 theta_b S-coordinate bottom control parameter.
10.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.00 time_ref Reference time for units attribute (yyyymmdd.dd)
0.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
0.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
10.000 T0 Background potential temperature (C) constant.
30.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt
T Aout(idFsur) Write out averaged free-surface.
T Aout(idUbar) Write out averaged 2D U-momentum component.
T Aout(idVbar) Write out averaged 2D V-momentum component.
T Aout(idUvel) Write out averaged 3D U-momentum component.
T Aout(idVvel) Write out averaged 3D V-momentum component.
T Aout(idWvel) Write out averaged W-momentum component.
T Aout(idOvel) Write out averaged omega vertical velocity.
T Aout(idTvar) Write out averaged tracer 01: temp
T Aout(idTvar) Write out averaged tracer 02: salt
Output/Input Files:
Output Restart File: lake_jersey_rst.nc
Output History File: lake_jersey_his.nc
Output Averages File: lake_jersey_avg.nc
Input Grid File: ../Data/lake_jersey_grd_a.nc
Input Nonlinear Initial File: ../Data/lake_jersey_ini_a.nc
ROMS I/O variables Metadata File: /home/bangdt/200820/trunk/ROMS/External/varinfo.dat
Sediment Parameters, Grid: 01
=============================
Size Sd50 Csed Srho Wsed Erate poros
Class (mm) (kg/m3) (kg/m3) (mm/s) (kg/m2/s) (nondim)
1 1.0000E-02 0.0000E+00 2.6500E+03 1.0000E-01 5.0000E-05 0.0000E+00
2 6.0000E-02 0.0000E+00 2.6500E+03 1.0000E-01 5.0000E-05 0.0000E+00
3 1.0000E+00 0.0000E+00 2.6500E+03 1.0000E+00 1.0000E-05 5.0000E-01
tau_ce tau_cd nl_tnu2 nl_tnu4 Akt_bak Tnudg
(N/m2) (N/m2) (m2/s) (m4/s) (m2/s) (day)
1 5.0000E-02 1.0000E-02 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00
2 5.0000E-02 1.0000E-02 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00
3 7.0000E-02 2.0000E-02 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00
morph_fac
(nondim)
1 1.0000E+00
2 1.0000E+00
3 1.0000E+00
New bed layer formed when deposition exceeds 0.10000E-01 (m).
Two first layers are combined when 2nd layer smaller than 0.00000E+00 (m).
Rate coefficient for bed load transport = 0.50000E-01
F LtracerSponge(03Turning OFF sponge on tracer 03: mud_01
F LtracerSponge(04Turning OFF sponge on tracer 04: mud_02
F LtracerSponge(05Turning OFF sponge on tracer 05: sand_01
F LtracerSrc(03) Turning OFF point sources/Sink on tracer 03: mud_01
F LtracerSrc(04) Turning OFF point sources/Sink on tracer 04: mud_02
F LtracerSrc(05) Turning OFF point sources/Sink on tracer 05: sand_01
F LtracerCLM(03) Turning OFF processing of climatology tracer 03: mud_01
F LtracerCLM(04) Turning OFF processing of climatology tracer 04: mud_02
F LtracerCLM(05) Turning OFF processing of climatology tracer 05: sand_01
F LnudgeTCLM(03) Turning OFF nudging of climatology tracer 03: mud_01
F LnudgeTCLM(04) Turning OFF nudging of climatology tracer 04: mud_02
F LnudgeTCLM(05) Turning OFF nudging of climatology tracer 05: sand_01
T Hout(idTvar) Write out sediment01: mud_01
T Hout(idTvar) Write out sediment02: mud_02
T Hout(idTvar) Write out sediment03: sand_01
T Hout(idfrac) Write out bed fraction, sediment 01: mudfrac_01
T Hout(idfrac) Write out bed fraction, sediment 02: mudfrac_02
T Hout(idfrac) Write out bed fraction, sediment 03: sandfrac_01
T Hout(idfrac) Write out mass, sediment 01: mudmass_01
T Hout(idfrac) Write out mass, sediment 02: mudmass_02
T Hout(idfrac) Write out mass, sediment 03: sandmass_01
T Hout(idUbld) Write out bed load at U-points, sediment 01: bedload_Umud_01
T Hout(idVbld) Write out bed load at V-points, sediment 01: bedload_Vmud_01
T Hout(idUbld) Write out bed load at U-points, sediment 02: bedload_Umud_02
T Hout(idVbld) Write out bed load at V-points, sediment 02: bedload_Vmud_02
T Hout(idUbld) Write out bed load at U-points, sediment 03: bedload_Usand_01
T Hout(idVbld) Write out bed load at V-points, sediment 03: bedload_Vsand_01
T Hout(idSbed) Write out BED property 01: bed_thickness
T Hout(idSbed) Write out BED property 02: bed_age
T Hout(idSbed) Write out BED property 03: bed_porosity
T Hout(idBott) Write out BOTTOM property 01: grain_diameter
T Hout(idBott) Write out BOTTOM property 02: grain_density
T Hout(idBott) Write out BOTTOM property 03: settling_vel
T Hout(idBott) Write out BOTTOM property 04: erosion_stress
T Hout(idBott) Write out BOTTOM property 05: ripple_length
T Hout(idBott) Write out BOTTOM property 06: ripple_height
T Hout(idBott) Write out BOTTOM property 07: bed_wave_amp
T Hout(idBott) Write out BOTTOM property 08: Zo_def
Node # 1 (pid= 18540) is active.
Node # 2 (pid= 18541) is active.
T Hout(idBott) Write out BOTTOM property 09: Zo_app
T Aout(idTvar) Write out averaged sediment01: mud_01
T Aout(idTvar) Write out averaged sediment02: mud_02
T Aout(idTvar) Write out averaged sediment03: sand_01
T Aout(idUbld) Write out U-bedload, sediment 01: bedload_Umud_01
T Aout(idVbld) Write out V-bedload, sediment 01: bedload_Vmud_01
T Aout(idUbld) Write out U-bedload, sediment 02: bedload_Umud_02
T Aout(idVbld) Write out V-bedload, sediment 02: bedload_Vmud_02
T Aout(idUbld) Write out U-bedload, sediment 03: bedload_Usand_01
T Aout(idVbld) Write out V-bedload, sediment 03: bedload_Vsand_01
Tile partition information for Grid 01: 100x80x8 tiling: 1x3
tile Istr Iend Jstr Jend Npts
0 1 100 1 27 21600
1 1 100 28 54 21600
2 1 100 55 80 20800
Tile minimum and maximum fractional coordinates for Grid 01:
(interior points only)
tile Xmin Xmax Ymin Ymax grid
0 0.50 100.50 0.50 27.50 RHO-points
1 0.50 100.50 27.50 54.50 RHO-points
2 0.50 100.50 54.50 80.50 RHO-points
0 1.00 100.00 0.50 27.50 U-points
1 1.00 100.00 27.50 54.50 U-points
2 1.00 100.00 54.50 80.50 U-points
0 0.50 100.50 1.00 27.50 V-points
1 0.50 100.50 27.50 54.50 V-points
2 0.50 100.50 54.50 80.00 V-points
Maximum halo size in XI and ETA directions:
HaloSizeI(1) = 333
HaloSizeJ(1) = 123
TileSide(1) = 105
TileSize(1) = 3675
Tracer Advection Scheme: NLM
========================
Variable Grid Horizontal Vertical
--------- ---- ------------ ------------
temp 1 Upstream3 Centered4
salt 1 Upstream3 Centered4
mud_01 1 HSIMT HSIMT
mud_02 1 HSIMT HSIMT
sand_01 1 HSIMT HSIMT
Akima4 Fourth-order Akima advection
Centered2 Second-order centered differences advection
Centered4 Fourth-order centered differences advection
HSIMT Third High-order Spatial Inteporlation at Middle Time Advection with TVD limiter
MPDATA Multidimensional Positive Definite Advection Algorithm, recursive method
Splines Conservative Parabolic Splines Reconstruction Advection (only vertical; not recommended)
Split_U3 Split third-order Upstream Advection
Upstream3 Third-order Upstream-biased Advection (only horizontal)
Lateral Boundary Conditions: NLM
============================
Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------
zeta 1 Closed Closed Closed Closed
ubar 1 Closed Closed Closed Closed
vbar 1 Closed Closed Closed Closed
u 1 Closed Closed Closed Closed
v 1 Closed Closed Closed Closed
temp 1 Closed Closed Closed Closed
salt 1 Closed Closed Closed Closed
mud_01 1 Closed Closed Closed Closed
mud_02 1 Closed Closed Closed Closed
sand_01 1 Closed Closed Closed Closed
tke 1 Closed Closed Closed Closed
Activated C-preprocessing Options:
LAKE_JERSEY Lake Jersey nesting test case with top-right refined grid
ANA_BPFLUX Analytical bottom passive tracers fluxes
ANA_BSFLUX Analytical kinematic bottom salinity flux
ANA_BTFLUX Analytical kinematic bottom temperature flux
ANA_SEDIMENT Analytical sediment initial conditions
ANA_SMFLUX Analytical kinematic surface momentum flux
ANA_SPFLUX Analytical surface passive tracer fluxes
ANA_SSFLUX Analytical kinematic surface salinity flux
ANA_STFLUX Analytical kinematic surface temperature flux
ANA_WWAVE Analytical wind induced waves
ASSUMED_SHAPE Using assumed-shape arrays
AVERAGES Writing out time-averaged nonlinear model fields
BEDLOAD_SOULSBY Activate bed load sediment transport Soulsby formula
!BOUNDARY_ALLGATHER Using mpi_allreduce in mp_boundary routine
!COLLECT_ALL... Using mpi_isend/mpi_recv in mp_collect routine
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002)
DOUBLE_PRECISION Double precision arithmetic numerical kernel.
GLS_MIXING Generic Length-Scale turbulence closure
MASKING Land/Sea masking
MPI MPI distributed-memory configuration
NONLINEAR Nonlinear Model
NONLIN_EOS Nonlinear Equation of State for seawater
N2S2_HORAVG Horizontal smoothing of buoyancy and shear
OUT_DOUBLE Double precision output fields in NetCDF files
POWER_LAW Power-law shape time-averaging barotropic filter
PROFILE Time profiling activated
K_GSCHEME Third-order upstream advection of TKE fields
REDUCE_ALLREDUCE Using mpi_allreduce in mp_reduce routine
!RST_SINGLE Double precision fields in restart NetCDF file
SALINITY Using salinity
SEDIMENT Cohesive and noncohesive sediments
SUSPLOAD Activate suspended sediment transport
SOLVE3D Solving 3D Primitive Equations
SSW_BBL Styles and Glenn Bottom Boundary Layer - modified
SSW_CALC_UB Internal computation of bottom orbital velocity
SSW_CALC_ZNOT Internal computation of bottom roughness
UV_ADV Advection of momentum
UV_COR Coriolis term
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum
UV_C4VADVECTION Fourth-order centered vertical advection of momentum
VAR_RHO_2D Variable density barotropic mode
Process Information:
Node # 0 (pid= 18539) is active.
INITIAL: Configuring and initializing forward nonlinear model ...
*******
GET_GRID - bathymetry at RHO-points: h
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = -1.77282174E+03 Max = 4.25088269E+03)
GET_GRID - Coriolis parameter at RHO-points: f
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 0.00000000E+00 Max = 0.00000000E+00)
GET_GRID - reciprocal XI-grid spacing: pm
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.92864618E-04 Max = 1.92864618E-04)
GET_GRID - reciprocal ETA-grid spacing: pn
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 9.65484794E-05 Max = 9.65484794E-05)
GET_GRID - x-location of RHO-points: x-rho
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.12348007E+07 Max = 1.17584841E+07)
GET_GRID - x-location of U-points: x_u
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.12373931E+07 Max = 1.17558916E+07)
GET_GRID - x-location of V-points: x_v
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.12348007E+07 Max = 1.17584841E+07)
GET_GRID - x-location of PSI-points: x_psi
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.12373931E+07 Max = 1.17558916E+07)
GET_GRID - y-location of RHO-points: y_rho
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.74528726E+06 Max = 2.58424402E+06)
GET_GRID - y-location of U-points: y_u
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.74528726E+06 Max = 2.58424402E+06)
GET_GRID - y-location of V-points: y_v
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.75046600E+06 Max = 2.57906528E+06)
GET_GRID - y-location of PSI-points: y-psi
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 1.75046600E+06 Max = 2.57906528E+06)
GET_GRID - mask on RHO-points: mask_rho
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID - mask on U-points: mask_u
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID - mask on V-points: mask_v
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID - mask on PSI-points: mask_psi
(Grid = 01, File: ../Data/lake_jersey_grd_a.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
Vertical S-coordinate System, Grid 01:
level S-coord Cs-curve Z at hmin at hc half way at hmax
8 0.0000000 0.0000000 0.000 0.000 0.000 0.000
7 -0.1250000 -0.0226239 39.079 -0.738 -29.047 -97.193
6 -0.2500000 -0.0889092 156.000 -1.695 -111.759 -379.550
5 -0.3750000 -0.1942304 342.518 -2.846 -242.451 -827.454
4 -0.5000000 -0.3313167 585.669 -4.157 -412.185 -1410.071
3 -0.6250000 -0.4908874 868.907 -5.579 -609.555 -2088.043
2 -0.7500000 -0.6624894 1173.596 -7.062 -821.713 -2817.038
1 -0.8750000 -0.8354715 1480.744 -8.552 -1035.567 -3551.886
0 -1.0000000 -1.0000000 1772.822 -10.000 -1239.030 -4250.883
Time Splitting Weights for Grid 01: ndtfast = 30 nfast = 42
==================================
Primary Secondary Accumulated to Current Step
1-0.0008094437383769 0.0333333333333333-0.0008094437383769 0.0333333333333333
2-0.0014053566728197 0.0333603147912792-0.0022148004111966 0.0666936481246126
3-0.0017877524645903 0.0334071600137066-0.0040025528757869 0.1001008081383191
4-0.0019566842408176 0.0334667517625262-0.0059592371166046 0.1335675599008453
5-0.0019122901320372 0.0335319745705535-0.0078715272486418 0.1670995344713988
6-0.0016548570247459 0.0335957175749547-0.0095263842733877 0.2006952520463536
7-0.0011849025289723 0.0336508794757796-0.0107112868023600 0.2343461315221331
8-0.0005032751608631 0.0336903762267453-0.0112145619632232 0.2680365077488784
9 0.0003887272597151 0.0337071520654408-0.0108258347035081 0.3017436598143192
10 0.0014892209965583 0.0336941944901169-0.0093366137069498 0.3354378543044362
11 0.0027955815694920 0.0336445537902317-0.0065410321374578 0.3690824080946679
12 0.0043042707117221 0.0335513677379153-0.0022367614257357 0.4026337758325831
13 0.0060106451121704 0.0334078920475245 0.0037738836864347 0.4360416678801076
14 0.0079087469427945 0.0332075372104522 0.0116826306292293 0.4692492050905598
15 0.0099910761708920 0.0329439123123590 0.0216737068001212 0.5021931174029188
16 0.0122483446563884 0.0326108764399960 0.0339220514565096 0.5348039938429148
17 0.0146692120341107 0.0322025982847830 0.0485912634906203 0.5670065921276978
18 0.0172400033810439 0.0317136245503127 0.0658312668716642 0.5987202166780105
19 0.0199444086685725 0.0311389577709445 0.0857756755402367 0.6298591744489550
20 0.0227631639997064 0.0304741441486588 0.1085388395399431 0.6603333185976138
21 0.0256737146312910 0.0297153720153352 0.1342125541712341 0.6900486906129490
22 0.0286498597812016 0.0288595815276255 0.1628624139524357 0.7189082721405746
23 0.0316613792205220 0.0279045862015855 0.1945237931729577 0.7468128583421600
24 0.0346736416507075 0.0268492068942347 0.2291974348236651 0.7736620652363948
25 0.0376471948657328 0.0256934188392112 0.2668446296893979 0.7993554840756060
26 0.0405373376992232 0.0244385123436867 0.3073819673886211 0.8237939964192927
27 0.0432936737565711 0.0230872677537126 0.3506756411451922 0.8468812641730054
28 0.0458596469320356 0.0216441452951603 0.3965352880772278 0.8685254094681656
29 0.0481720587108284 0.0201154903974257 0.4447073467880562 0.8886408998655914
30 0.0501605672561820 0.0185097551070648 0.4948679140442381 0.9071506549726561
31 0.0517471682814030 0.0168377361985254 0.5466150823256412 0.9239883911711815
32 0.0528456577069106 0.0151128305891453 0.5994607400325517 0.9391012217603267
33 0.0533610761022577 0.0133513086655816 0.6528218161348094 0.9524525304259084
34 0.0531891349131379 0.0115726061288397 0.7060109510479473 0.9640251365547481
35 0.0522156244733761 0.0097996349650684 0.7582265755213234 0.9738247715198165
36 0.0503158038019031 0.0080591141492892 0.8085423793232265 0.9818838856691057
37 0.0473537721847153 0.0063819206892258 0.8558961515079418 0.9882658063583315
38 0.0431818225418188 0.0048034616164019 0.8990779740497606 0.9930692679747335
39 0.0376397765791564 0.0033640675316746 0.9367177506289170 0.9964333355064081
40 0.0305543017255206 0.0021094083123694 0.9672720523544377 0.9985427438187775
41 0.0217382098544505 0.0010909315881854 0.9890102622088881 0.9996336754069629
42 0.0109897377911119 0.0003663245930371 1.0000000000000000 1.0000000000000000
ndtfast, nfast = 30 42 nfast/ndtfast = 1.40000
Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):
1.000000000000 1.047601458608 0.523800729304 1.000000000000 1.000000000000
Power filter parameters, Fgamma, gamma = 0.28400 0.18933
Metrics information for Grid 01:
===============================
Minimum X-grid spacing, DXmin = 5.18498422E+00 km Water points = 5.18498422E+00 km
Maximum X-grid spacing, DXmax = 5.18498422E+00 km Water points = 5.18498422E+00 km
Minimum Y-grid spacing, DYmin = 1.03574909E+01 km Water points = 1.03574909E+01 km
Maximum Y-grid spacing, DYmax = 1.03574909E+01 km Water points = 1.03574909E+01 km
Minimum Z-grid spacing, DZmin = -3.07148846E+02 m Water points = -5.80559302E+00 m
Maximum Z-grid spacing, DZmax = 7.34847624E+02 m Water points = 7.34847624E+02 m
Minimum barotropic Courant Number = 1.14531898E-03
Maximum barotropic Courant Number = 1.76175818E-01
Maximum Coriolis Courant Number = 0.00000000E+00
NLM: GET_STATE - Reading state initial conditions, 0001-01-01 00:00:00.00
(Grid 01, t = 0.0000, File: lake_jersey_ini_a.nc, Rec=0001, Index=1)
- free-surface
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- potential temperature
(Min = 1.05902901E+01 Max = 1.94097099E+01)
- salinity
(Min = 3.32000313E+01 Max = 3.67999992E+01)
Basin information for Grid 01:
Maximum grid stiffness ratios: rx0 = 1.219780E+02 (Beckmann and Haidvogel)
rx1 = 2.067214E+01 (Haney)
Initial domain volumes: TotVolume = 1.6543354048E+14 m3
MinCellVol = -3.1178024141E+08 m3
MaxCellVol = 3.6654217247E+10 m3
Max/Min = -1.1756427245E+02
NL ROMS/TOMS: started time-stepping: (Grid: 01 TimeSteps: 000000000001 - 000000001440)
Node # 1 CPU: 0.061
TIME-STEP YYYY-MM-DD hh:mm:ss.ss KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOLUME
C => (i,j,k) Cu Cv Cw Max Speed
0 0001-01-01 00:00:00.00 NaN NaN NaN NaN
(000,00,0) 0.000000E+00 0.000000E+00 0.000000E+00 0.000000E+00
Found Error: 01 Line: 313 Source: ROMS/Nonlinear/main3d.F
Found Error: 01 Line: 300 Source: ROMS/Drivers/nl_ocean.h
Elapsed wall CPU time for each process (seconds):
Node # 0 CPU: 0.059
Total: 0.180
Average: 0.060
Minimum: 0.059
Maximum: 0.061
Nonlinear model elapsed CPU time profile, Grid: 01
Allocation and array initialization .............. 0.049 (27.2253 %)
Ocean state initialization ....................... 0.011 ( 5.8664 %)
Reading of input data ............................ 0.000 ( 0.0277 %)
Processing of input data ......................... 0.003 ( 1.4475 %)
Computation of global information integrals ...... 0.003 ( 1.6577 %)
2D/3D coupling, vertical metrics ................. 0.006 ( 3.5699 %)
Omega vertical velocity .......................... 0.001 ( 0.5080 %)
Equation of state for seawater ................... 0.009 ( 4.7390 %)
Total: 0.081 45.0414 %
Unique kernel(s) regions profiled ................ 0.081 45.0414 %
Residual, non-profiled code ...................... 0.099 54.9586 %
All percentages are with respect to total time = 0.180
MPI communications profile, Grid: 01
Message Passage: 2D halo exchanges ............... 0.007 ( 3.6758 %)
Message Passage: 3D halo exchanges ............... 0.006 ( 3.4523 %)
Message Passage: 4D halo exchanges ............... 0.002 ( 1.3643 %)
Message Passage: data broadcast .................. 0.039 (21.7060 %)
Message Passage: data reduction .................. 0.001 ( 0.8058 %)
Message Passage: data scattering.................. 0.018 ( 9.7802 %)
Message Passage: point data gathering ............ 0.000 ( 0.0372 %)
Message Passage: synchronization barrier ......... 0.001 ( 0.3644 %)
Total: 0.074 41.1859 %
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Dynamic and Automatic memory (MB) usage for Grid 01: 100x80x8 tiling: 1x3
tile Dynamic Automatic USAGE MPI-Buffers
0 16.11 2.47 18.58 1.17
1 17.09 2.47 19.55 1.17
2 16.11 2.39 18.50 1.17
TOTAL 49.31 7.32 56.63 3.50
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
ROMS/TOMS - Output NetCDF summary for Grid 01:
Analytical header files used:
ROMS/Functionals/ana_btflux.h
/home/bangdt/200820/test/lake_jersey/Forward/ana_sediment.h
/home/bangdt/200820/test/lake_jersey/Forward/ana_smflux.h
/home/bangdt/200820/test/lake_jersey/Forward/ana_stflux.h
/home/bangdt/200820/test/lake_jersey/Forward/ana_wwave.h
Found Error: 01 Line: 357 Source: ROMS/Utility/close_io.F
ROMS/TOMS - Blows up ................ exit_flag: 1
Node # 2 CPU: 0.060
ERROR STOP
ERROR STOP
ERROR STOP
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
Process name: [[39142,1],2]
Exit code: 1
--------------------------------------------------------------------------
