errors when compiling test

[anzhe0629]

Hi all

When I try to compile test in ROMS, for examples ~/test/bl_test or ~/test/kelvin. I meet the same error message.

Code: Select all

cd /media/jason/Program/ROMS/ocean/repository/test/bl_test/Build;  -c -heap-arrays -fp-model precise -ip -O3 mod_kinds.f90
/bin/sh: 1: -c: not found
ROMS/Modules/Module.mk:15: recipe for target '/media/jason/Program/ROMS/ocean/repository/test/bl_test/Build/mod_kinds.o' failed
make: *** [/media/jason/Program/ROMS/ocean/repository/test/bl_test/Build/mod_kinds.o] Error 127

my nc-config is as follows.

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  --cc        -> gcc
  --cflags    ->  -I/usr/include -DgFortran
  --libs      -> -L/usr/lib -lnetcdf

  --cxx       -> g++
  --has-c++   -> yes

  --fc        -> gfortran
  --fflags    -> -g -O2 -I/usr/include
  --flibs     -> -L/usr/lib -lnetcdff -lnetcdf
  --has-f77   -> yes
  --has-f90   -> yes

  --has-dap   -> yes
  --has-nc2   -> yes
  --has-nc4   -> yes
  --has-hdf5  -> yes
  --has-hdf4  -> no
  --has-pnetcdf-> no
  --has-szlib -> 

  --prefix    -> /usr
  --includedir-> /usr/include
  --version   -> netCDF 4.1.3

I even can not figure out what kind of message it is. Any comments and suggestions are appreciated! Thanks

[kate]

From the FAQ:

Errors like this:
cd Build; -c -O3 mod_kinds.f90
/bin/sh: -c: not found
The command:
FC := $(shell which ${FC})
in the Compilers/xxx-xxx.mk file has failed to find the compiler you specified, setting FC to the null string. You need to find out which compiler you were asking it to look for and to make sure it is in your path. If the flag USE_MPIF90 is set, it will be looking for "mpif90". What do you get from the command "which mpif90"? If you are trying for a serial run first, what does "which gfortran" give you?

How did you set FORT?

[anzhe0629]

I think it is gfortran

the follows is from ~/trunk/ROMS/Bin/build.sh

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#setenv FORT                ifort
  setenv FORT                gfortran
 #setenv FORT                pgi
 
  setenv USE_DEBUG           on          # use Fortran debugging flags
  setenv USE_LARGE           on          # activate 64-bit compilation
 #setenv USE_NETCDF4         on          # compile with NetCDF-4 library
 #setenv USE_PARALLEL_IO     on          # Parallel I/O with NetCDF-4/HDF5 
 #setenv USE_MY_LIBS         on          # use my library paths below

Is this helpful? what other file should I change to compile ROMS except ~/trunk/ROMS/Bin/build.sh?


Thanks for your reply.

From the FAQ:

Errors like this:
cd Build; -c -O3 mod_kinds.f90
/bin/sh: -c: not found
The command:
FC := $(shell which ${FC})
in the Compilers/xxx-xxx.mk file has failed to find the compiler you specified, setting FC to the null string. You need to find out which compiler you were asking it to look for and to make sure it is in your path. If the flag USE_MPIF90 is set, it will be looking for "mpif90". What do you get from the command "which mpif90"? If you are trying for a serial run first, what does "which gfortran" give you?

How did you set FORT?

[kate]

If the flag USE_MPIF90 is set, it will be looking for "mpif90".

Is USE_MPIF90 set?

What do you get from the command "which mpif90"?

If you are trying for a serial run first, what does "which gfortran" give you?

[anzhe0629]

If the flag USE_MPIF90 is set, it will be looking for "mpif90".

Is USE_MPIF90 set?

USE_MPI90 is off.
In ~/Bin/build.sh

# setenv USE_MPI on
# setenv USE_MPI90 on
# setenv which_MPI mpich
# setenv which_MPI mpich2
# setenv which_MPI openmpi

Also, the USE_OpenMP is turned off.

What do you get from the command "which mpif90"?

When I run which mpi90, it shows
/usr/bin/mpif90

If you are trying for a serial run first, what does "which gfortran" give you?

it shows
/usr/bin/gfortran