I have a problem when running the coawst model with nonesting option. The detail of this issue is presented below:
Code: Select all
[cloud@igplogin COAWST_NONESTING]$ mpirun -np 3 ./coawstM Projects/Sarika/coupling_sarika.in
Coupled Input File name = Projects/Sarika/coupling_sarika.in
Coupled Input File name = Projects/Sarika/coupling_sarika.in
Model Coupling:
Ocean Model MPI nodes: 000 - 000
Waves Model MPI nodes: 001 - 001
Atmos Model MPI nodes: 002 - 002
WAVgrid 01 dt= 180.0 -to- OCNgrid 01 dt= 4.0, CplInt: 1800.0 Steps: 010
OCNgrid 01 dt= 4.0 -to- WAVgrid 01 dt= 180.0, CplInt: 1800.0 Steps: 450
ATMgrid 01 dt= 54.0 -to- OCNgrid 01 dt= 4.0, CplInt: 1800.0 Steps: 100
OCNgrid 01 dt= 4.0 -to- ATMgrid 01 dt= 54.0, CplInt: 1800.0 Steps: ***
ATMgrid 02 dt= 18.0 -to- OCNgrid 01 dt= 4.0, CplInt: 1800.0 Steps: 100
OCNgrid 01 dt= 4.0 -to- ATMgrid 02 dt= 18.0, CplInt: 1800.0 Steps: 450
ATMgrid 01 dt= 54.0 -to- WAVgrid 01 dt= 180.0, CplInt: 1800.0 Steps: 100
WAVgrid 01 dt= 180.0 -to- ATMgrid 01 dt= 54.0, CplInt: 1800.0 Steps: 030
ATMgrid 02 dt= 18.0 -to- WAVgrid 01 dt= 180.0, CplInt: 1800.0 Steps: 100
WAVgrid 01 dt= 180.0 -to- ATMgrid 02 dt= 18.0, CplInt: 1800.0 Steps: 010
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Model Input Parameters: ROMS/TOMS version 3.8
Thursday - November 26, 2020 - 9:01:58 AM
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SWAN grid 1 is preparing computation
module_io_quilt_old.F 2931 F
Quilting with 1 groups of 0 I/O tasks.
Quilting with 1 groups of 0 I/O tasks.
Hurricane Sarika
Operating system : Linux
CPU/hardware : x86_64
Compiler system : ifort
Compiler command : /work/users/cloud/user/manh/COAWST/LIBRARIES/mpich2/bin/mpif90
Compiler flags : -fp-model precise -ip -O3 -traceback -check uninit -assume byterecl -I/work/users/cloud/user/manh/COAWST/LIBRARIES/MCT/include -I/work/users/cloud/user/manh/COAWST/COAWST7//WRF/main -I/work/users/cloud/user/manh/COAWST/COAWST7//WRF/external/esmf_time_f90 -I/work/users/cloud/user/manh/COAWST/COAWST7//WRF/frame -I/work/users/cloud/user/manh/COAWST/COAWST7//WRF/share
MPI Communicator : -2080374780 PET size = 1
Input Script :
SVN Root URL : https://coawstmodel.sourcerepo.com/coawstmodel/COAWST
SVN Revision : 1492
Local Root : /work/users/cloud/user/manh/COAWST/COAWST7
Header Dir : /work/users/cloud/user/manh/COAWST/COAWST7/Projects/Sandy
Header file : sandy.h
Analytical Dir : /work/users/cloud/user/manh/COAWST/COAWST7/Projects/Sandy
Resolution, Grid 01: 300x220x16, Parallel Nodes: 1, Tiling: 1x1
Physical Parameters, Grid: 01
=============================
21600 ntimes Number of timesteps for 3-D equations.
4.000 dt Timestep size (s) for 3-D equations.
28 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
F LcycleRST Switch to recycle time-records in restart file.
43200 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
2700 nHIS Number of timesteps between the writing fields
into history file.
2700 ndefHIS Number of timesteps between creation of new
history files.
0 nQCK Number of timesteps between the writing fields
into quicksave file.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
43200 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
43200 ndefAVG Number of timesteps between creation of new
time-averaged file.
2.0000E-01 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 01: temp
2.0000E-01 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 02: salt
1.0000E-01 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E-03 Akt_limit(01) Vertical diffusion upper threshold (m2/s)
for tracer 01: temp
1.0000E-03 Akt_limit(02) Vertical diffusion upper threshold (m2/s)
for tracer 02: salt
1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
1.0000E-03 Akv_limit Vertical viscosity upper threshold (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
3.000 gls_p GLS stability exponent.
1.500 gls_m GLS turbulent kinetic energy exponent.
-1.000 gls_n GLS turbulent length scale exponent.
7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy.
1.0000E-12 gls_Pmin GLS minimum value of dissipation.
5.4770E-01 gls_cmu0 GLS stability coefficient.
1.4400E+00 gls_c1 GLS shear production coefficient.
1.9200E+00 gls_c2 GLS dissipation coefficient.
-4.0000E-01 gls_c3m GLS stable buoyancy production coefficient.
1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient.
1.0000E+00 gls_sigk GLS constant Schmidt number for TKE.
1.3000E+00 gls_sigp GLS constant Schmidt number for PSI.
1400.000 charnok_alpha Charnok factor for Zos calculation.
0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave).
0.250 sz_alpha Factor for Wave dissipation surface tke flux .
100.000 crgban_cw Factor for Craig/Banner surface tke flux.
0.000 wec_alpha WEC factor for roller/breaking energy distribution.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
2.5000E-02 rdrg2 Quadratic bottom drag coefficient.
2.0000E-02 Zob Bottom roughness (m).
2.0000E-02 Zos Surface roughness (m).
1 lmd_Jwt Jerlov water type.
1 Vtransform S-coordinate transformation equation.
1 Vstretching S-coordinate stretching function.
1.0000E+01 theta_s S-coordinate surface control parameter.
4.0000E-01 theta_b S-coordinate bottom control parameter.
50.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
40.000 dstart Time-stamp assigned to model initialization (days).
0.000 tide_start Reference time origin for tidal forcing (days).
20161216.00 time_ref Reference time for units attribute (yyyymmdd.dd)
1.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
1.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
9.0000E+01 Tnudg_SSS Nudging/relaxation time scale (days)
for sea surface salinity.
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
1.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
10.000 T0 Background potential temperature (C) constant.
30.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt
T Hout(idUsms) Write out surface U-momentum stress.
T Hout(idVsms) Write out surface V-momentum stress.
T Hout(idUbms) Write out bottom U-momentum stress.
T Hout(idVbms) Write out bottom V-momentum stress.
T Hout(idU2Sd) Write out 2D u-momentum stokes velocity.
T Hout(idV2Sd) Write out 2D v-momentum stokes velocity.
T Hout(idU3Sd) Write out 3D u-momentum stokes velocity.
T Hout(idV3Sd) Write out 3D v-momentum stokes velocity.
T Hout(idW3Sd) Write out 3D omega-momentum stokes velocity.
T Hout(idW3St) Write out 3D w-momentum stokes velocity.
T Hout(idWztw) Write out WEC quasi-static sea level adjustment.
T Hout(idWqsp) Write out WEC quasi-static pressure.
T Hout(idWbeh) Write out WEC Bernoulli head.
T Hout(idWamp) Write out wave height.
T Hout(idWlen) Write out wavelength.
T Hout(idWlep) Write out peak wavelength.
T Hout(idWdir) Write out mean wave direction.
T Hout(idWptp) Write out wave surface period.
T Hout(idWpbt) Write out wave bottom period.
T Hout(idWorb) Write out wave bottom orbital velocity.
T Hout(idUwav) Wave-avg surface u-velocity.
T Hout(idVwav) Wave-avg surface v-velocity.
T Hout(idVvis) Write out vertical viscosity: AKv.
T Hout(idMtke) Write out turbulent kinetic energy.
T Hout(idMtls) Write out turbulent generic length-scale.
T Aout(idSdif) Write out averaged vertical diffusion: AKt(isalt).
Output/Input Files:
Output Restart File: ocean_rst1.nc
Prefix for History Files: ocean_hist1
Prefix for Averages Files: ocean_avg1
Physical parameters File:
Input Grid File: Projects/Sarika/ROMS_COAWST_grd1.nc
Input Nonlinear Initial File: Projects/Sarika/Sarika_ini.nc
Tidal Forcing File: Projects/Sarika/tide_forc_Sarika.nc
Ntasks in X 1 , ntasks in Y 1
Ntasks in X 1 , ntasks in Y 1
WRF V4.1.5 MODEL
WRF V4.1.5 MODEL
*************************************
Parent domain
ids,ide,jds,jde 1 301 1 221
ims,ime,jms,jme -4 306 -4 226
*************************************
Parent domain
ids,ide,jds,jde 1 301 1 221
ims,ime,jms,jme -4 306 -4 226
ips,ipe,jps,jpe 1 301 1 221
*************************************
ips,ipe,jps,jpe 1 301 1 221
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
DYNAMICS OPTION: Eulerian Mass Coordinate
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
coawstM 0000000003C193AA Unknown Unknown Unknown
libpthread-2.17.s 00007F1C3961B5D0 Unknown Unknown Unknown
coawstM 000000000090FC93 read_phypar_ 3082 read_phypar.f90
coawstM 0000000000796709 inp_par_ 87 inp_par.f90
coawstM 00000000004455D9 ocean_control_mod 90 ocean_control.f90
coawstM 000000000041EE5D MAIN__ 373 master.f90
coawstM 0000000000418FE2 Unknown Unknown Unknown
libc-2.17.so 00007F1C38D5B495 __libc_start_main Unknown Unknown
coawstM 0000000000418EE9 Unknown Unknown Unknown
Please help me to address it.
Many thanks!
Best Regards,
