ROMS/TOMS - Blows up ................ exit_flag: 1

Discussion of how to use ROMS on different regional and basin scale applications.

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shiyf
Posts: 52
Joined: Mon Sep 09, 2013 11:09 pm
Location: OUC

ROMS/TOMS - Blows up ................ exit_flag: 1

#1 Unread post by shiyf »

hi，

when i run roms with my own application, it blows up.i get the error message from the log file,

NLM: GET_STATE - Read state initial conditions, t = 0 00:00:00
(File: shiyf_ini.nc, Rec=0001, Index=1)
- free-surface
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- potential temperature
(Min = -9.98224053E+03 Max = 6.25174815E+04)
- salinity
(Min = -9.99900000E+03 Max = 4.08229370E+01)
i set missing value -9999.in land, From above,the error may be result from my input file, but when i check my ini file use matlab
clear all;close all

filename = 'E:\ROMS\predata\shiyf_ini.nc';
grd = 'E:\ROMS\predata\seagrid.nc';

temp = ncread(filename,'temp');

lon = ncread(grd,'lon_rho');
lat = ncread(grd,'lat_rho');
mask = ncread(grd,'mask_rho');

[i_rho j_rho]=size(mask);

%
for i =1:i_rho
for j=1:j_rho
if mask(i,j)==1
if min(temp(i,j,:)) <-10.||max(temp(i,j,:)) > 50.
disp(i)
disp(j)
disp(temp(i,j,:))
break
end
end
end
end

temp values in ocean are all normal,the SSS's condition in frc file is the same.
I am very confused why roms reading is not correct?Can you give me some advice,

the log file

Model Input Parameters: ROMS/TOMS version 3.6
Wednesday - December 25, 2013 - 2:36:13 AM
-----------------------------------------------------------------------------

SHIYF

Operating system : Linux
CPU/hardware : x86_64
Compiler system : ifort
Compiler command : /lustre/inspur/mpi/openmpi-intel/bin/mpif90
Compiler flags : -heap-arrays -fp-model precise -ip -O3 -free -free -free

Input Script : ocean_shiyf.in

SVN Root URL : https://www.myroms.org/svn/src/trunk
SVN Revision : Unversioned directory

Local Root : /lustre/home/shiyongfangWKJ/roms/trunk
Header Dir : /lustre/home/shiyongfangWKJ/roms/projects/roms_shiyf
Header file : shiyf.h
Analytical Dir: /lustre/home/shiyongfangWKJ/roms/projects/roms_shiyf

Resolution, Grid 01: 0119x0449x016, Parallel Nodes: 40, Tiling: 004x010


Physical Parameters, Grid: 01
=============================

207360 ntimes Number of timesteps for 3-D equations.
150.000 dt Timestep size (s) for 3-D equations.
15 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
17280 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
17280 nHIS Number of timesteps between the writing fields
into history file.
207360 ndefHIS Number of timesteps between creation of new
history files.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
17280 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
207360 ndefAVG Number of timesteps between creation of new
time-averaged file.
0.0000E+00 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 01: temp
0.0000E+00 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 02: salt
5.0000E+00 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
3.000 gls_p GLS stability exponent.
1.500 gls_m GLS turbulent kinetic energy exponent.
-1.000 gls_n GLS turbulent length scale exponent.
7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy.
1.0000E-12 gls_Pmin GLS minimum value of dissipation.
5.4770E-01 gls_cmu0 GLS stability coefficient.
1.4400E+00 gls_c1 GLS shear production coefficient.
1.9200E+00 gls_c2 GLS dissipation coefficient.
-4.0000E-01 gls_c3m GLS stable buoyancy production coefficient.
1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient.
1.0000E+00 gls_sigk GLS constant Schmidt number for TKE.
1.3000E+00 gls_sigp GLS constant Schmidt number for PSI.
1400.000 charnok_alpha Charnok factor for Zos calculation.
0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave).
0.250 sz_alpha Factor for Wave dissipation surface tke flux .
100.000 crgban_cw Factor for Craig/Banner surface tke flux.
3.0000E-04 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
2.0000E-02 Zob Bottom roughness (m).
2.0000E-02 Zos Surface roughness (m).
1 lmd_Jwt Jerlov water type.
2 Vtransform S-coordinate transformation equation.
1 Vstretching S-coordinate stretching function.
5.0000E+00 theta_s S-coordinate surface control parameter.
4.0000E-01 theta_b S-coordinate bottom control parameter.
30.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
-1.00 time_ref Reference time for units attribute (yyyymmdd.dd)
2.0000E+00 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
2.0000E+00 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
T VolCons(2) NLM southern edge boundary volume conservation.
T VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
14.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt

T Aout(idFsur) Write out averaged free-surface.
T Aout(idUbar) Write out averaged 2D U-momentum component.
T Aout(idVbar) Write out averaged 2D V-momentum component.
T Aout(idUvel) Write out averaged 3D U-momentum component.
T Aout(idVvel) Write out averaged 3D V-momentum component.
T Aout(idWvel) Write out averaged W-momentum component.
T Aout(idOvel) Write out averaged omega vertical velocity.
T Aout(idTvar) Write out averaged tracer 01: temp
T Aout(idTvar) Write out averaged tracer 02: salt

Output/Input Files:

Output Restart File: ocean_rst.nc
Prefix for History Files: ocean_his
Prefix for Averages Files: ocean_avg
Input Grid File: shiyf_grd.nc
Input Nonlinear Initial File: shiyf_ini.nc
Input Forcing File 01: shiyf_frc.nc
Input Boundary File: shiyf_bry.nc

Tile partition information for Grid 01: 0119x0449x0016 tiling: 004x010

tile Istr Iend Jstr Jend Npts

0 1 30 1 45 21600
1 31 60 1 45 21600
2 61 90 1 45 21600
3 91 119 1 45 20880
4 1 30 46 90 21600
5 31 60 46 90 21600
6 61 90 46 90 21600
7 91 119 46 90 20880
8 1 30 91 135 21600
9 31 60 91 135 21600
10 61 90 91 135 21600
11 91 119 91 135 20880
12 1 30 136 180 21600
13 31 60 136 180 21600
14 61 90 136 180 21600
15 91 119 136 180 20880
16 1 30 181 225 21600
17 31 60 181 225 21600
18 61 90 181 225 21600
19 91 119 181 225 20880
20 1 30 226 270 21600
21 31 60 226 270 21600
22 61 90 226 270 21600
23 91 119 226 270 20880
24 1 30 271 315 21600
25 31 60 271 315 21600
26 61 90 271 315 21600
27 91 119 271 315 20880
28 1 30 316 360 21600
29 31 60 316 360 21600
30 61 90 316 360 21600
31 91 119 316 360 20880
32 1 30 361 405 21600
33 31 60 361 405 21600
34 61 90 361 405 21600
35 91 119 361 405 20880
36 1 30 406 449 21120
37 31 60 406 449 21120
38 61 90 406 449 21120
39 91 119 406 449 20416

Tile minimum and maximum fractional grid coordinates:
(interior points only)

tile Xmin Xmax Ymin Ymax grid

0 0.50 30.50 0.50 45.50 RHO-points
1 30.50 60.50 0.50 45.50 RHO-points
2 60.50 90.50 0.50 45.50 RHO-points
3 90.50 119.50 0.50 45.50 RHO-points
4 0.50 30.50 45.50 90.50 RHO-points
5 30.50 60.50 45.50 90.50 RHO-points
6 60.50 90.50 45.50 90.50 RHO-points
7 90.50 119.50 45.50 90.50 RHO-points
8 0.50 30.50 90.50 135.50 RHO-points
9 30.50 60.50 90.50 135.50 RHO-points
10 60.50 90.50 90.50 135.50 RHO-points
11 90.50 119.50 90.50 135.50 RHO-points
12 0.50 30.50 135.50 180.50 RHO-points
13 30.50 60.50 135.50 180.50 RHO-points
14 60.50 90.50 135.50 180.50 RHO-points
15 90.50 119.50 135.50 180.50 RHO-points
16 0.50 30.50 180.50 225.50 RHO-points
17 30.50 60.50 180.50 225.50 RHO-points
18 60.50 90.50 180.50 225.50 RHO-points
19 90.50 119.50 180.50 225.50 RHO-points
20 0.50 30.50 225.50 270.50 RHO-points
21 30.50 60.50 225.50 270.50 RHO-points
22 60.50 90.50 225.50 270.50 RHO-points
23 90.50 119.50 225.50 270.50 RHO-points
24 0.50 30.50 270.50 315.50 RHO-points
25 30.50 60.50 270.50 315.50 RHO-points
26 60.50 90.50 270.50 315.50 RHO-points
27 90.50 119.50 270.50 315.50 RHO-points
28 0.50 30.50 315.50 360.50 RHO-points
29 30.50 60.50 315.50 360.50 RHO-points
30 60.50 90.50 315.50 360.50 RHO-points
31 90.50 119.50 315.50 360.50 RHO-points
32 0.50 30.50 360.50 405.50 RHO-points
33 30.50 60.50 360.50 405.50 RHO-points
34 60.50 90.50 360.50 405.50 RHO-points
35 90.50 119.50 360.50 405.50 RHO-points
36 0.50 30.50 405.50 449.50 RHO-points
37 30.50 60.50 405.50 449.50 RHO-points
38 60.50 90.50 405.50 449.50 RHO-points
39 90.50 119.50 405.50 449.50 RHO-points

0 1.00 30.50 0.50 45.50 U-points
1 30.50 60.50 0.50 45.50 U-points
2 60.50 90.50 0.50 45.50 U-points
3 90.50 119.00 0.50 45.50 U-points
4 1.00 30.50 45.50 90.50 U-points
5 30.50 60.50 45.50 90.50 U-points
6 60.50 90.50 45.50 90.50 U-points
7 90.50 119.00 45.50 90.50 U-points
8 1.00 30.50 90.50 135.50 U-points
9 30.50 60.50 90.50 135.50 U-points
10 60.50 90.50 90.50 135.50 U-points
11 90.50 119.00 90.50 135.50 U-points
12 1.00 30.50 135.50 180.50 U-points
13 30.50 60.50 135.50 180.50 U-points
14 60.50 90.50 135.50 180.50 U-points
15 90.50 119.00 135.50 180.50 U-points
16 1.00 30.50 180.50 225.50 U-points
17 30.50 60.50 180.50 225.50 U-points
18 60.50 90.50 180.50 225.50 U-points
19 90.50 119.00 180.50 225.50 U-points
20 1.00 30.50 225.50 270.50 U-points
21 30.50 60.50 225.50 270.50 U-points
22 60.50 90.50 225.50 270.50 U-points
23 90.50 119.00 225.50 270.50 U-points
24 1.00 30.50 270.50 315.50 U-points
25 30.50 60.50 270.50 315.50 U-points
26 60.50 90.50 270.50 315.50 U-points
27 90.50 119.00 270.50 315.50 U-points
28 1.00 30.50 315.50 360.50 U-points
29 30.50 60.50 315.50 360.50 U-points
30 60.50 90.50 315.50 360.50 U-points
31 90.50 119.00 315.50 360.50 U-points
32 1.00 30.50 360.50 405.50 U-points
33 30.50 60.50 360.50 405.50 U-points
34 60.50 90.50 360.50 405.50 U-points
35 90.50 119.00 360.50 405.50 U-points
36 1.00 30.50 405.50 449.50 U-points
37 30.50 60.50 405.50 449.50 U-points
38 60.50 90.50 405.50 449.50 U-points
39 90.50 119.00 405.50 449.50 U-points

0 0.50 30.50 1.00 45.50 V-points
1 30.50 60.50 1.00 45.50 V-points
2 60.50 90.50 1.00 45.50 V-points
3 90.50 119.50 1.00 45.50 V-points
4 0.50 30.50 45.50 90.50 V-points
5 30.50 60.50 45.50 90.50 V-points
6 60.50 90.50 45.50 90.50 V-points
7 90.50 119.50 45.50 90.50 V-points
8 0.50 30.50 90.50 135.50 V-points
9 30.50 60.50 90.50 135.50 V-points
10 60.50 90.50 90.50 135.50 V-points
11 90.50 119.50 90.50 135.50 V-points
12 0.50 30.50 135.50 180.50 V-points
13 30.50 60.50 135.50 180.50 V-points
14 60.50 90.50 135.50 180.50 V-points
15 90.50 119.50 135.50 180.50 V-points
16 0.50 30.50 180.50 225.50 V-points
17 30.50 60.50 180.50 225.50 V-points
18 60.50 90.50 180.50 225.50 V-points
19 90.50 119.50 180.50 225.50 V-points
20 0.50 30.50 225.50 270.50 V-points
21 30.50 60.50 225.50 270.50 V-points
22 60.50 90.50 225.50 270.50 V-points
23 90.50 119.50 225.50 270.50 V-points
24 0.50 30.50 270.50 315.50 V-points
25 30.50 60.50 270.50 315.50 V-points
26 60.50 90.50 270.50 315.50 V-points
27 90.50 119.50 270.50 315.50 V-points
28 0.50 30.50 315.50 360.50 V-points
29 30.50 60.50 315.50 360.50 V-points
30 60.50 90.50 315.50 360.50 V-points
31 90.50 119.50 315.50 360.50 V-points
32 0.50 30.50 360.50 405.50 V-points
33 30.50 60.50 360.50 405.50 V-points
34 60.50 90.50 360.50 405.50 V-points
35 90.50 119.50 360.50 405.50 V-points
36 0.50 30.50 405.50 449.00 V-points
37 30.50 60.50 405.50 449.00 V-points
38 60.50 90.50 405.50 449.00 V-points
39 90.50 119.50 405.50 449.00 V-points

Maximum halo size in XI and ETA directions:

HaloSizeI(1) = 84
HaloSizeJ(1) = 114
TileSide(1) = 51
TileSize(1) = 1836


Lateral Boundary Conditions: NLM
============================

Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------

zeta 1 Closed Clamped Clamped Closed

ubar 1 Closed Clamped Clamped Closed

vbar 1 Closed Clamped Clamped Closed

u 1 Closed Clamped Clamped Closed

v 1 Closed Clamped Clamped Closed

temp 1 Closed Clamped Clamped Closed

salt 1 Closed Clamped Clamped Closed

tke 1 Closed Clamped Clamped Closed

Activated C-preprocessing Options:

SHIYF SHIYF
ANA_BSFLUX Analytical kinematic bottom salinity flux.
ANA_BTFLUX Analytical kinematic bottom temperature flux.
ASSUMED_SHAPE Using assumed-shape arrays.
AVERAGES Writing out time-averaged nonlinear model fields.
CURVGRID Orthogonal curvilinear grid.
DIFF_GRID Horizontal diffusion coefficient scaled by grid size.
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002).
DOUBLE_PRECISION Double precision arithmetic.
GLS_MIXING Generic Length-Scale turbulence closure.
KANTHA_CLAYSON Kantha and Clayson stability function formulation.
MASKING Land/Sea masking.
MIX_GEO_TS Mixing of tracers along geopotential surfaces.
MIX_S_UV Mixing of momentum along constant S-surfaces.
MPI MPI distributed-memory configuration.
NONLINEAR Nonlinear Model.
NONLIN_EOS Nonlinear Equation of State for seawater.
NO_WRITE_GRID Not Writing grid arrays into NetCDF ouput files.
N2S2_HORAVG Horizontal smoothing of buoyancy and shear.
POWER_LAW Power-law shape time-averaging barotropic filter.
PROFILE Time profiling activated .
K_GSCHEME Third-order upstream advection of TKE fields.
RADIATION_2D Use tangential phase speed in radiation conditions.
RST_SINGLE Single precision fields in restart NetCDF file.
SALINITY Using salinity.
SCORRECTION Surface salinity flux correction.
SOLAR_SOURCE Solar Radiation Source Term.
SOLVE3D Solving 3D Primitive Equations.
SPLINES Conservative parabolic spline reconstruction.
TS_U3HADVECTION Third-order upstream horizontal advection of tracers.
TS_C4VADVECTION Fourth-order centered vertical advection of tracers.
TS_DIF2 Harmonic mixing of tracers.
UV_ADV Advection of momentum.
UV_COR Coriolis term.
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum.
UV_C4VADVECTION Fourth-order centered vertical advection of momentum.
UV_LDRAG Linear bottom stress.
UV_VIS2 Harmonic mixing of momentum.
VAR_RHO_2D Variable density barotropic mode.
VISC_GRID Horizontal viscosity coefficient scaled by grid size.

Process Information:

Node # 4 (pid= 32061) is active.
Node # 20 (pid= 28884) is active.
Node # 10 (pid= 31893) is active.
Node # 17 (pid= 31900) is active.
Node # 12 (pid= 31895) is active.
Node # 36 (pid= 1919) is active.
Node # 15 (pid= 31898) is active.
Node # 28 (pid= 28892) is active.
Node # 14 (pid= 31897) is active.
Node # 1 (pid= 32058) is active.
Node # 9 (pid= 32066) is active.
Node # 33 (pid= 1916) is active.
Node # 25 (pid= 28889) is active.
Node # 7 (pid= 32064) is active.
Node # 23 (pid= 28887) is active.
Node # 31 (pid= 1914) is active.
Node # 16 (pid= 31899) is active.
Node # 39 (pid= 1922) is active.
Node # 0 (pid= 32057) is active.
Node # 8 (pid= 32065) is active.
Node # 24 (pid= 28888) is active.
Node # 32 (pid= 1915) is active.
Node # 11 (pid= 31894) is active.
Node # 2 (pid= 32059) is active.
Node # 26 (pid= 28890) is active.
Node # 18 (pid= 31901) is active.
Node # 34 (pid= 1917) is active.
Node # 3 (pid= 32060) is active.
Node # 27 (pid= 28891) is active.
Node # 19 (pid= 31902) is active.
Node # 35 (pid= 1918) is active.
Node # 21 (pid= 28885) is active.
Node # 5 (pid= 32062) is active.
Node # 13 (pid= 31896) is active.
Node # 37 (pid= 1920) is active.
Node # 29 (pid= 28893) is active.
Node # 6 (pid= 32063) is active.
Node # 22 (pid= 28886) is active.
Node # 30 (pid= 1913) is active.
Node # 38 (pid= 1921) is active.

INITIAL: Configuring and initializing forward nonlinear model ...


Vertical S-coordinate System:

level S-coord Cs-curve Z at hmin at hc half way at hmax

16 0.0000000 0.0000000 0.000 0.000 0.000 0.000
15 -0.0625000 -0.0048948 -2.482 -1.011 -15.660 -28.640
14 -0.1250000 -0.0119914 -5.346 -2.055 -37.530 -69.324
13 -0.1875000 -0.0230908 -8.907 -3.159 -70.690 -131.905
12 -0.2500000 -0.0409944 -13.651 -4.365 -123.039 -231.706
11 -0.3125000 -0.0696342 -20.262 -5.732 -205.668 -390.235
10 -0.3750000 -0.1133185 -29.490 -7.325 -330.726 -631.060
9 -0.4375000 -0.1742175 -41.712 -9.176 -504.336 -966.052
8 -0.5000000 -0.2489214 -56.334 -11.234 -716.880 -1376.559
7 -0.5625000 -0.3284417 -71.794 -13.364 -943.008 -1813.413
6 -0.6250000 -0.4042644 -86.611 -15.439 -1158.706 -2230.040
5 -0.6875000 -0.4744488 -100.448 -17.429 -1358.504 -2615.825
4 -0.7500000 -0.5437741 -114.135 -19.407 -1555.879 -2996.911
3 -0.8125000 -0.6205544 -129.118 -21.496 -1774.279 -3418.777
2 -0.8750000 -0.7145184 -147.090 -23.843 -2041.142 -3934.639
1 -0.9375000 -0.8366254 -169.957 -26.612 -2387.377 -4604.450
0 -1.0000000 -1.0000000 -200.000 -30.000 -2850.000 -5500.000

Time Splitting Weights: ndtfast = 15 nfast = 22

Primary Secondary Accumulated to Current Step

1-0.0006740978872509 0.0666666666666667-0.0006740978872509 0.0666666666666667
2-0.0001913161153518 0.0667116065258167-0.0008654140026027 0.1333782731924834
3 0.0014472038369421 0.0667243609335069 0.0005817898343395 0.2001026341259903
4 0.0042370228855824 0.0666278806777107 0.0048188127199218 0.2667305148037010
5 0.0081665994120431 0.0663454124853385 0.0129854121319649 0.3330759272890396
6 0.0132119623624627 0.0658009725245357 0.0261973744944276 0.3988768998135752
7 0.0193298623751124 0.0649201750337048 0.0455272368695400 0.4637970748472801
8 0.0264494009361902 0.0636315175420307 0.0719766378057303 0.5274285923893107
9 0.0344621375639418 0.0618682241462847 0.1064387753696720 0.5892968165355954
10 0.0432106750211074 0.0595707483086885 0.1496494503907794 0.6488675648442840
11 0.0524757225556949 0.0566900366406147 0.2021251729464743 0.7055576014848987
12 0.0619616371700794 0.0531916551369017 0.2640868101165537 0.7587492566218004
13 0.0712804429184289 0.0490608793255631 0.3353672530349826 0.8078101359473635
14 0.0799343282324558 0.0443088497976678 0.4153015812674384 0.8521189857450313
15 0.0872966212754959 0.0389798945821708 0.5025982025429343 0.8910988803272021
16 0.0925912433249121 0.0331601198304711 0.5951894458678464 0.9242590001576731
17 0.0948706401828253 0.0269873702754769 0.6900600860506717 0.9512463704331501
18 0.0929921916151718 0.0206626609299552 0.7830522776658435 0.9719090313631054
19 0.0855930988190858 0.0144631814889438 0.8686453764849293 0.9863722128520491
20 0.0710637499186094 0.0087569749010047 0.9397091264035388 0.9951291877530538
21 0.0475195634887281 0.0040193915730974 0.9872286898922669 0.9991485793261512
22 0.0127713101077333 0.0008514206738489 1.0000000000000002 1.0000000000000000

ndtfast, nfast = 15 22 nfast/ndtfast = 1.46667

Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):

1.000000000000 1.070450639131 0.535225319565 1.000000000000 1.000000000000

Power filter parameters, Fgamma, gamma = 0.28400 0.09467

Minimum X-grid spacing, DXmin = 8.48739060E+00 km
Maximum X-grid spacing, DXmax = 9.59010345E+01 km
Minimum Y-grid spacing, DYmin = 1.97654987E+01 km
Maximum Y-grid spacing, DYmax = 5.56286561E+01 km
Minimum Z-grid spacing, DZmin = 2.48171081E+00 m
Maximum Z-grid spacing, DZmax = 8.95550429E+02 m

Minimum barotropic Courant Number = 9.69255846E-03
Maximum barotropic Courant Number = 9.00101619E-02
Maximum Coriolis Courant Number = 1.92843807E-02

Horizontal mixing scaled by grid size, GRDMAX = 7.28116721E+01 km

NLM: GET_STATE - Read state initial conditions, t = 0 00:00:00
(File: shiyf_ini.nc, Rec=0001, Index=1)
- free-surface
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- vertically integrated v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- u-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- v-momentum component
(Min = 0.00000000E+00 Max = 0.00000000E+00)
- potential temperature
(Min = -9.98224053E+03 Max = 6.25174815E+04)
- salinity
(Min = -9.99900000E+03 Max = 4.08229370E+01)
GET_2DFLD - surface u-momentum stress, t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.75512195E+00 Max = 8.27846076E-05)
GET_2DFLD - surface v-momentum stress, t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.75512195E+00 Max = 1.66505575E-04)
GET_2DFLD - solar shortwave radiation flux, t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.44796034E-03 Max = 6.54721022E-05)
GET_2DFLD - surface net heat flux, t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.44796034E-03 Max = 2.58579529E-05)
GET_2DFLD - surface net freswater flux, (E-P), t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -1.15729126E-03 Max = 1.15583962E-07)
GET_2DFLD - sea surface salinity climatology, t = 345 00:00:00
(Rec=0012, Index=1, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.99900000E+03 Max = 4.07532845E+01)
GET_NGFLD - free-surface eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -5.81862376E-01 Max = 9.57945365E+00)
GET_NGFLD - free-surface southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -3.65501400E-01 Max = 8.04470641E+00)
GET_NGFLD - 2D u-momentum eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.43556882E+02 Max = 1.40019754E-02)
GET_NGFLD - 2D v-momentum eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 0.00000000E+00 Max = 1.89365791E+02)
GET_NGFLD - 2D u-momentum southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -8.99202521E-03 Max = 3.99919066E-03)
GET_NGFLD - 2D v-momentum southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -8.63434183E-02 Max = 3.60160155E-02)
GET_NGFLD - 3D u-momentum eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.53312044E+03 Max = 3.30222533E-02)
GET_NGFLD - 3D v-momentum eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 0.00000000E+00 Max = 2.53142997E+03)
GET_NGFLD - 3D u-momentum southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -5.44804139E-01 Max = 2.41975658E-01)
GET_NGFLD - 3D v-momentum southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -1.88590554E+00 Max = 1.13105720E+00)
GET_NGFLD - temperature eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.72054750E+00 Max = 1.48424599E+01)
GET_NGFLD - salinity eastern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 8.51362923E+00 Max = 3.63578905E+01)
GET_NGFLD - temperature southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 1.50453202E+00 Max = 2.74800147E+01)
GET_NGFLD - salinity southern boundary condition, t = 345 00:00:00
(Rec=0012, Index=2, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 3.33199475E+01 Max = 3.52573975E+01)

Maximum grid stiffness ratios: rx0 = 9.273286E-01 (Beckmann and Haidvogel)
rx1 = 1.409255E+01 (Haney)


Initial basin volumes: TotVolume = 3.9063693677E+17 m3
MinVolume = 2.3066237529E+09 m3
MaxVolume = 4.0996942351E+12 m3
Max/Min = 1.7773571567E+03


NL ROMS/TOMS: started time-stepping: (Grid: 01 TimeSteps: 00000001 - 00207360)

GET_2DFLD - surface u-momentum stress, t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.75512195E+00 Max = 9.38875355E-05)
GET_2DFLD - surface v-momentum stress, t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.75512195E+00 Max = 1.62762607E-04)
GET_2DFLD - solar shortwave radiation flux, t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.44796034E-03 Max = 6.92072962E-05)
GET_2DFLD - surface net heat flux, t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.44796034E-03 Max = 3.07865833E-05)
GET_2DFLD - surface net freswater flux, (E-P), t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -1.15729126E-03 Max = 1.14237994E-07)
GET_2DFLD - sea surface salinity climatology, t = 15 00:00:00
(Rec=0001, Index=2, File: shiyf_frc.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -9.99900000E+03 Max = 4.00087700E+01)
GET_NGFLD - free-surface eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -3.34679358E-01 Max = 9.57787214E+00)
GET_NGFLD - free-surface southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -3.37361403E-01 Max = 8.05706182E+00)
GET_NGFLD - 2D u-momentum eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.43560545E+02 Max = 1.32895002E-03)
GET_NGFLD - 2D v-momentum eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 0.00000000E+00 Max = 1.89365791E+02)
GET_NGFLD - 2D u-momentum southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -7.88433526E-03 Max = 3.57221571E-03)
GET_NGFLD - 2D v-momentum southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -6.98625588E-02 Max = 3.03533820E-02)
GET_NGFLD - 3D u-momentum eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.53313185E+03 Max = 1.76022060E-02)
GET_NGFLD - 3D v-momentum eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 0.00000000E+00 Max = 2.53142997E+03)
GET_NGFLD - 3D u-momentum southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -4.77691997E-01 Max = 2.16141044E-01)
GET_NGFLD - 3D v-momentum southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -1.72189022E+00 Max = 9.60177938E-01)
GET_NGFLD - temperature eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = -2.58442841E+00 Max = 1.06106594E+01)
GET_NGFLD - salinity eastern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 9.07068764E+00 Max = 3.63554746E+01)
GET_NGFLD - temperature southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 1.50453202E+00 Max = 2.71757121E+01)
GET_NGFLD - salinity southern boundary condition, t = 15 00:00:00
(Rec=0001, Index=1, File: shiyf_bry.nc)
(Tmin= 15.0000 Tmax= 345.0000)
(Min = 3.35264814E+01 Max = 3.51822212E+01)

STEP Day HH:MM:SS KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOLUME
C => (i,j,k) Cu Cv Cw Max Speed

0 0 00:00:00 4.312250E+00 2.254635E+04 2.255066E+04 4.003951E+17
(119,427,10) 7.132390E+00 0.000000E+00 0.000000E+00 1.791191E+03

Elapsed CPU time (seconds):

Node # 1 CPU: 1.232
Node # 4 CPU: 1.234
Node # 6 CPU: 1.237
Node # 3 CPU: 1.230
Node # 5 CPU: 1.232
Node # 7 CPU: 1.226
Node # 8 CPU: 1.225
Node # 2 CPU: 1.231
Node # 9 CPU: 1.225
Node # 0 CPU: 0.542

ROMS/TOMS - Output NetCDF summary for Grid 01:

Analytical header files used:

ROMS/Functionals/ana_btflux.h
ROMS/Functionals/ana_hmixcoef.h
ROMS/Functionals/ana_nudgcoef.h

ROMS/TOMS - Blows up ................ exit_flag: 1


MAIN: Abnormal termination: BLOWUP.
Node # 25 CPU: 1.236
Node # 29 CPU: 1.202
Node # 37 CPU: 1.196
Node # 23 CPU: 1.227
Node # 30 CPU: 1.213
Node # 38 CPU: 1.197
Node # 11 CPU: 1.247
Node # 28 CPU: 1.222
Node # 16 CPU: 1.201
Node # 24 CPU: 1.216
Node # 17 CPU: 1.179
Node # 20 CPU: 1.209
Node # 21 CPU: 1.195
Node # 27 CPU: 1.230
Node # 26 CPU: 1.235
Node # 19 CPU: 1.221
Node # 22 CPU: 1.195
Node # 15 CPU: 1.164
Node # 33 CPU: 1.209
Node # 12 CPU: 1.237
Node # 39 CPU: 1.220
Node # 14 CPU: 1.193
Node # 32 CPU: 1.211
Node # 10 CPU: 1.238
Node # 34 CPU: 1.209
Node # 13 CPU: 1.192
Node # 35 CPU: 1.218
Node # 18 CPU: 1.206
Node # 36 CPU: 1.230
Node # 31 CPU: 1.194
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kate
Posts: 4091
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: ROMS/TOMS - Blows up ................ exit_flag: 1

#2 Unread post by kate »

What did you call the missing value attribute for your T and S in the initial file? Can we see the "ncdump -h" of it? I know ROMS understands the _FillValue attribute and you can check the reading routines (nf_fread3d.F say) for the attributes ROMS will check.
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